>retro_chof_263
CAAAATCATGTTTCACGTGTACCCTGCAATGTAGAAGGAATTAAGTCCTGAATTAGAAAAGGTATTCATTAAAGAAAATA
ACAGGAAGGAGGAAGTGACCAAGCCTTTGGACATACCAGATGGCCGAAGAGCTCCCCTCCGTGCTCACTACCAGAGCAGT
AGGCCTCGCAGCACTGACACTGACTCCCTCTGTCCAGGAGTGCAGCAGCAGCTGCAGCGGTAATTCACCCTGTGTCTCCC
CATTTTGTCCCCCGGAATCCCAGGATGGCAGCCCTTGCTCAACTGAAGATTTGCCCTATGATCATGATAAAGACAGTGGG
AGTAGCTCACCATTACCCAAGAATGCTTCATCTCCCAAACCAAACAACAGCTACATGTCAAACGGGAGCCCCCGGAGGGA
TGTGAGCAAGTGAAGGTCTTTCAGGAAATGGTGTCTGGTCAGCCTATCTCAGTCCTTCTCTTTTCATGTCCTGACAAAAA
CAAGGTTAATTTCATCCCAGCTGGTTCAGCTTTCTGTCCTGTAAAAGTTCTAGGCCCTCTCTTACCTGCCTCCGACCTGA
TGCTCAAGAACTCTCCTAACTCTGGCCAGACCTCAGCTCTGGCCACTCTGACTGTTGAACAGCTCTCACCCTGGGTTTCC
TTTGCATCTCCTTCCAATGACACCAGCACAGTGGGTCCCACAGAGGTCTCTACTCAACAGCCATCCCAGCAGCAGCAGCA
GCTTCTGCAGGAACTGCAGGCTGAAGAGCTCATCTCTGCTCAGAACTATGTGATCATC
ORF - retro_chof_263 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.55 % |
Parental protein coverage: |
65.82 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | KSSVSRVSCNVEGI-SPELEKVFIKENNGKEEVTKPLDIPDGRRAPLPAHYRSSSTRSIDTQT-PSVQER |
| ...VSRV.CNVEGI.SPELEKVFIKENN.KEEVTKPLDIPDGRRAPL.AHY.SS..RS.DT...P..... |
Retrocopy | QNHVSRVPCNVEGI>SPELEKVFIKENNRKEEVTKPLDIPDGRRAPLRAHYQSSRPRSTDTDS<PLSRSA |
|
Parental | SSSCSSHSPCVSPFCP-PESQDGSPCSAEDLLYDRDKDSGSSSPLPKYASSPKPNNSYM-FKREPPEGCE |
| ........P....F.P.PESQDGSPCS.EDL.YD.DKDSGSSSPLPK.ASSPKPNNSYM..KREPPEGCE |
Retrocopy | AAAAAVIHPVSPHFVP<PESQDGSPCSTEDLPYDHDKDSGSSSPLPKNASSPKPNNSYM<VKREPPEGCE |
|
Parental | RVKVFEEMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLMLKNSPNSGQSSALSTLTV |
| .VKVF.EM.S.QPIS..LFSCPDKNKVNFIP.GSAFCPVK.LGPLLPASDLMLKNSPNSGQ.SAL.TLTV |
Retrocopy | QVKVFQEMVSGQPISVLLFSCPDKNKVNFIPAGSAFCPVKVLGPLLPASDLMLKNSPNSGQTSALATLTV |
|
Parental | EQLSSRVSFASLSNDTSTVGPTESSTQQPSQQQQQLLQELQAEEHISAQNYVII |
| EQLS..VSFAS.SNDTSTVGPTE.STQQPSQQQQQLLQELQAEE.ISAQNYVII |
Retrocopy | EQLSPWVSFASPSNDTSTVGPTEVSTQQPSQQQQQLLQELQAEELISAQNYVII |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_263 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.