RetrogeneDB ID: | retro_chof_2674 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_96397:479..973(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BTG4 | ||
Ensembl ID: | ENSCHOG00000000032 | ||
Aliases: | None | ||
Description: | B-cell translocation gene 4 [Source:HGNC Symbol;Acc:13862] |
Percent Identity: | 73.37 % |
Parental protein coverage: | 72.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | INNNQNRDPILERACVESNVNFSHLRLPKXXXXXXXXXXXXXXYGEKNHPFTIASFKDRWEGWELSQQIS |
INNNQN.DPILERA..ESNV.FS.L.LPK..............Y.EKNHPFTIASFK..WE.W.L.QQIS | |
Retrocopy | INNNQNKDPILERAFAESNVTFSQLGLPKEMTIWVDPFEMCCKYCEKNHPFTIASFKGTWEEWDLFQQIS |
Parental | RAVSRLTLDLDDY-SGASSDEESCSK-EPQM-IPKVSNPKSIYQVENLKQPFQSWFQIPRKKNMTDGQAS |
.AVSRLTLDL.DY.SG.SSD.ESCSK..PQ..IPKVSNPKSIYQVENL.QPFQSWFQIP.KKN.TDG.AS | |
Retrocopy | HAVSRLTLDL-DY>SGTSSDKESCSK<KPQK<IPKVSNPKSIYQVENLNQPFQSWFQIPHKKNTTDGHAS |
Parental | LLGNAYRAWHKNPKSYRPAAMLVGQRVDR |
LLGNAY.AWHKNP.S.RPAAMLVG..VD. | |
Retrocopy | LLGNAYHAWHKNPRSSRPAAMLVGHQVDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014210 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000000032 | 1 retrocopy |
retro_chof_2674 ,
|
Equus caballus | ENSECAG00000012564 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014496 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015020 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010435 | 1 retrocopy |