RetrogeneDB ID: | retro_chof_282 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_6156:26392..27007(-) | ||
Located in intron of: | ENSCHOG00000001240 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PEX13 | ||
Ensembl ID: | ENSCHOG00000012871 | ||
Aliases: | None | ||
Description: | peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:8855] |
Percent Identity: | 89.76 % |
Parental protein coverage: | 50.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | IGLRRGSENEDLWAESEGTVACLGAEDGAANSAKSWPIFLFFAVILGGPYLIWKLLSTHSDEVADNTNWA |
IGLRRGSENED.W.ESEGT.ACLGAED.AANS.KSWPIFLFFAVILGGP.LIWKLLS.H.DEVADNTN.A | |
Retrocopy | IGLRRGSENEDFWEESEGTGACLGAEDRAANSTKSWPIFLFFAVILGGPQLIWKLLSAHNDEVADNTN*A |
Parental | SGEDDHVVARAEYDFAAVSEEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLVPANYVKILGKRR |
SGEDDHVVARAEYDFAA..EEEISFR.GDMLNLALKEQQPKV.GWLLASLDGQTTG.VPANY.KILGKRR | |
Retrocopy | SGEDDHVVARAEYDFAAIPEEEISFRDGDMLNLALKEQQPKVHGWLLASLDGQTTGFVPANYIKILGKRR |
Parental | GRKTMESSKISKQRQSYTNTTLIKGATAADSLDEQEAAFESVFVETNKVPVASDSTGKNGDKQDL |
GRKT.ESSKIS.Q.QSYTNTTLIKGATAADSLDE.EAAFESVFVET.KVPVASD.TGKNGDKQDL | |
Retrocopy | GRKTVESSKIS*QQQSYTNTTLIKGATAADSLDE*EAAFESVFVETSKVPVASDYTGKNGDKQDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012871 | 1 retrocopy |
retro_chof_282 ,
|
Equus caballus | ENSECAG00000019622 | 1 retrocopy | |
Felis catus | ENSFCAG00000028969 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020283 | 1 retrocopy |