RetrogeneDB ID: | retro_chof_334 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_7535:36550..37054(-) | ||
Located in intron of: | ENSCHOG00000002553 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PHYH | ||
Ensembl ID: | ENSCHOG00000002160 | ||
Aliases: | None | ||
Description: | phytanoyl-CoA 2-hydroxylase [Source:HGNC Symbol;Acc:8940] |
Percent Identity: | 61.71 % |
Parental protein coverage: | 58.64 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | YTLDNNVLTLEQ-RQFYEENGFLIIKNLVSDADIQRFRNEFEKICRKEVKPMGLTVMRDVTIAKSEYIPS |
YTL..NVL...Q.RQFYEENGFL..KNLVS.ADI..FR.EF.K.C.KEVKPM...V.R.V..AKSE.I.. | |
Retrocopy | YTLVKNVLSQKQ>RQFYEENGFLVLKNLVSSADI*HFRDEFGKFCTKEVKPME*MVIRNVPTAKSESISN |
Parental | EEVVSKVQDFQEDEELFRYCSLPEILKYVECFTGPDIMAVHTMLINKPPDSGNCKKTSRHPLHQDLHYFP |
E.VV.KVQDFQED.ELFR.C.L..ILKYVEC.T...I.A...ML.N.P.DSG..KKTS.HPL.QDLH..P | |
Retrocopy | EKVVMKVQDFQEDKELFRHCTLWGILKYVECATELSILA---MLVNRPRDSG--KKTSHHPLDQDLH*LP |
Parental | FRPSNH-IVCAWTAMEHIDRSNGCLVVLPGTHKGP |
FR.SN...V.A.TA.EH.D....CL....GTH..P | |
Retrocopy | FRTSNQ<VVGA*TALEHTDPNSSCLLAPLGTHGIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002160 | 1 retrocopy |
retro_chof_334 ,
|
Cavia porcellus | ENSCPOG00000007582 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018044 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011113 | 1 retrocopy |