RetrogeneDB ID:

retro_chof_48

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_53734:4845..5469(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSCHOG00000011034
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000012958
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_48
ATGAGCTGCACCATCGAGAAGATCCTGACAGACGCCAAGACGCTGCTGGAGAGGCTGCGGGAGCATGATGCGGCCGCCGA
ATCGCTGGTGGATCAGTCGGCGGCGCTGCACCGGCGGGTGGCAGCTATGCGGGAGGCAGGGGCAGCGCTTCCGGACCAGT
GTCAAGAGGATGCATCCGATATGAAGGACGTGTCCAAATACAAACCACACATTCTGCTGTCCCAAGAGAACACACAGATT
AGAGACTTGCAACAGGAAAACAGAGAACTATGGGTTTCCTTGGAGGAACACCAAGATGCCTTGGAACTCATCATGAGCAA
GTACCGGAAACAGATGTTACAGTTAATGGTTGCTAAGAAAGCAGTGGATGCCGAACCGATCCTGAAAGCTCACCAGTCCC
ACTCTGCAGAAATAGAGAGTCAGATTGACAGAATCTGTGAAATGGGAGAAGTGATGAGGAAAGCTGTTCAGGTAGATGAT
GACCGGTTTTGTAAGATTCAGGAAAAACTAGCCCAATTAGAGCTTGAAAATAAGGAACTTCGAGAATTATTATCCATCAG
CAGTGAGTCCCTTCAGGTCAGGAAGGAAGATTCAATGGATACTGCATCCCAAGCCATCAGATAA

ORF - retro_chof_48 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.15 %
Parental protein coverage: 55.92 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPILKAHQSHSAEIESQIDRICEMGEVMRKAVQVD
LWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPILKAHQSHSAEIESQIDRICEMGEVMRKAVQVD
RetrocopyLWVSLEEHQDALELIMSKYRKQMLQLMVAKKAVDAEPILKAHQSHSAEIESQIDRICEMGEVMRKAVQVD
ParentalDDQFCKIQEKLAQLELENKELRELLSISSESLQVRKEDSMDTASQAIR
DD.FCKIQEKLAQLELENKELRELLSISSESLQVRKEDSMDTASQAIR
RetrocopyDDRFCKIQEKLAQLELENKELRELLSISSESLQVRKEDSMDTASQAIR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_48 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000012958 1 retrocopy
retro_chof_48 ,
Echinops telfairi ENSETEG000000078051 retrocopy
Loxodonta africana ENSLAFG000000105021 retrocopy
Microcebus murinus ENSMICG000000154461 retrocopy
Otolemur garnettii ENSOGAG000000059522 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000016841 retrocopy
Tupaia belangeri ENSTBEG000000077721 retrocopy



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