RetrogeneDB ID:

retro_chof_522

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_117221:3474..4953(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000005172
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_522
CATGTTGATACAAGCCCAGAAGGGTCATCTCAGAGTTCACTTTCTCCTGTAGCCATCAGTGGAAACCATTTGATCAGTGC
AAGTGTGCAAAGACAAAGTAAAAGGATTGCAGACAAAAAAGTTTGCAGGGTGGAATCAGGAAAAGCAGGCTGCTTCTCTC
CTAAAATCAGTCATAAAGAAAAGGTTCGAAGATCTCTTCATTTGAAATTTAGTCTGGGGAAAAGTAACAGAGATGATGGA
TGTTCTGATGTCAATAGATATGAAAATGTTGGTCGGCGACTTGCAAGTCAACAAAATTTTTAAAATAGAATTGAATCTGT
AAAAACAGGTCTACTTTTTAGCCCAGATATTGAAAGATTAACAAAGAAAGGTTCAAAAAAGATCAGTAAGTCTGAGGAAT
ACTTATCAACTCCAGAGCAGCTGGATGGAACAAATTACCACATGTCTTGAACAGGACCTACTAATTCAAGTTTTCAGGAA
ATAGACGCAAATGAAACATCTCCGATAGAGGGAAATCTTGAGGTGGAAAACTCTTCTTTGGATCCTGATCTTATGGTTGA
AAAGTCACCTGTTACTTCATATGCGCTTACCCCTTCTACTGTACACAATAAGCATAATAGCAACCTAACTGGAAACTCTC
CTAATGGGGATGAAGATAACTTGACCACAGAGACTTTGGTGAAAATTCAGAAAGCATTTTCTGAATCTGGAAGTAATCTT
CACACATTGATAAATCATGGGCAGTCCTCAATAACTAATATGGTGAAAGCAAAATTAAATGAAACATCATATACAGAATA
TAGCCCAAAGGAAAATTTATTTGAAACTAATGATTTGACTGTGATAGAATCGAAGAAAAAGTACGAACACCAAGCTAGTA
AAGATGAAAATAGTTTCTCAGAAAGACACTTCTCACTACATCAAACTCAAGAATTAGGTAGAGAAGCAACTACAAAATGT
TACTCAACTCAGATGAAGGTGGAACATGAAAAAACCATTTATTCAAATATAGCAAAAGATTATTTAAGCATGCAAGAGTT
CCCCAGTGAAGAACAAATAAAGAAACAGGAGTCCGCAAGGAATAAACTAAATACTAAATTAAAGGAGAATGAGAGTGTGA
TTGAAGAGAATTTATTGAAATGCACAGCTTCTGGGGAGGACATGTCTAAATCATCATCTTCAAAGCAGATTACCTGTAAT
ATAACAACTTTGTCAAAACCTAGGCCTATGAGAATTGTTAAACAGCAGTCTCTGGTAGAAAAATGTGATAAAATGGTTTC
AGAAAGTTTACAAATGACAGAGCATGGAAAGGTTTCAGACCACATACAGTGGTTTAACAAACTTTCCTTAAATGAACCAA
ATAGAACAAAAATTAAATCACCTCTTAAGTTTCAGCGTACTCCTGTCCGTCAGTCTGTCAGAAGAATTAATTCTTTATCG
GAGTATAACCGACAACCTGTAAGGTGTAAGTTGGCAAGT

ORF - retro_chof_522 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.36 %
Parental protein coverage: 57.04 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalHVDTSPEGSSQSSLSPVAISGNHLISASVQRQSKRIADKKVCRVESGKAGCFSPKISRKEKVRRSLRLKF
HVDTSPEGSSQSSLSPVAISGNHLISASVQRQSKRIADKKVCRVESGKAGCFSPKIS.KEKVRRSL.LKF
RetrocopyHVDTSPEGSSQSSLSPVAISGNHLISASVQRQSKRIADKKVCRVESGKAGCFSPKISHKEKVRRSLHLKF
ParentalSLGKSNRDVNGCSDVNRYENVGRRLASQQNFKNRIESVKTGLLFSPDIERLTKKGSKKISKSEEYLSTPE
SLGKSNRD..GCSDVNRYENVGRRLASQQNF.NRIESVKTGLLFSPDIERLTKKGSKKISKSEEYLSTPE
RetrocopySLGKSNRD-DGCSDVNRYENVGRRLASQQNF*NRIESVKTGLLFSPDIERLTKKGSKKISKSEEYLSTPE
ParentalQLDGTNYCMSWTGPTNSSFQEIDANETSPIEGNLEVENSSLDPDLMVEKSPVTSYALTPSIVDNKHNSNL
QLDGTNY.MS.TGPTNSSFQEIDANETSPIEGNLEVENSSLDPDLMVEKSPVTSYALTPS.V.NKHNSNL
RetrocopyQLDGTNYHMS*TGPTNSSFQEIDANETSPIEGNLEVENSSLDPDLMVEKSPVTSYALTPSTVHNKHNSNL
ParentalTGNSPNGDEDNLTTETLVKIQ-AFSESGSNLHTL-NHGQSSITNMVKAKLNETSYTEYSPKENLFETNDL
TGNSPNGDEDNLTTETLVKIQ.AFSESGSNLHTL.NHGQSSITNMVKAKLNETSYTEYSPKENLFETNDL
RetrocopyTGNSPNGDEDNLTTETLVKIQKAFSESGSNLHTLINHGQSSITNMVKAKLNETSYTEYSPKENLFETNDL
ParentalTVIESKKKYEHQASKDDNSFSERDFSLHQTQELGREATTKCYSTQMKVEHEKTIYSNIAKDYLSMQKFPS
TVIESKKKYEHQASKD.NSFSER.FSLHQTQELGREATTKCYSTQMKVEHEKTIYSNIAKDYLSMQ.FPS
RetrocopyTVIESKKKYEHQASKDENSFSERHFSLHQTQELGREATTKCYSTQMKVEHEKTIYSNIAKDYLSMQEFPS
ParentalEEQIKKQESTRNKLNTKLKENESVIEENLLKCTASGEDMSK-SSSEQITCNITTLSKPRPMRIVKQQSLV
EEQIKKQES.RNKLNTKLKENESVIEENLLKCTASGEDMSK.SSS.QITCNITTLSKPRPMRIVKQQSLV
RetrocopyEEQIKKQESARNKLNTKLKENESVIEENLLKCTASGEDMSKSSSSKQITCNITTLSKPRPMRIVKQQSLV
ParentalEKCDKMVSESLQMTEHGKVSDHIQWFNKLSLNEPNRTKIKSPLKFQRTPVRQSVRRINSLSEYNRQPV-C
EKCDKMVSESLQMTEHGKVSDHIQWFNKLSLNEPNRTKIKSPLKFQRTPVRQSVRRINSLSEYNRQPV.C
RetrocopyEKCDKMVSESLQMTEHGKVSDHIQWFNKLSLNEPNRTKIKSPLKFQRTPVRQSVRRINSLSEYNRQPVRC
ParentalKLAS
KLAS
RetrocopyKLAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_522 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000005172 1 retrocopy
retro_chof_522 ,



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