>retro_chof_55
ATGACCCACCAGAGCCTGTGGGACCTGTCGGAGGCCAACGTCGAGGATGGAGAGATCCGCATCAACGTGGGCGGCTTCAA
GAGGCGGCTGCGCTCGCACACGCTGCTGCGCTTCCCCGAGACGCGCCTGGGCCGCCTGCTGCTCTGCCACTCGCGCGAGG
CCATCCTGGAGCTCTGCGATGACTACGACGACGTCCAGCGTGAGTTCTACTTCGACCGCAACCCGGAGCTCTTCCCCTAC
GTGCTGCATTTCTACCACACCGGCAAGCTTCACGTCATGGCCGAGCTGTGCGTCTTCTCCTTCAGCCAGGAAATTGAGTA
CTGGGGCATCAATGAATTCTTCATCGACTCCTGCTGCAGCTACAGCTACCACGGCCGCAAAGTGGAGCCTGAGCAGGAGA
AGTGGGACGAGCAGAGCGACCAGGAGAGCACCACGTCCTCCTTCGACGAGATCCTCGCCTTCTATAACGACGCCTCCAAG
TTCGATGGGCAGCCCCTGGGCAACTTCCGAAGACAGCTGTGGCTGGCTCTGGACAACCCCGGCTACTCCGTCCTGAGCAG
GGTCTTCAGCATCCTGTCCATCCTCGTGGTGTTGGGGTCCATCATCACCATGTGCCTCAATAGCCTACCAGACTTCCAAA
TCCCTGACAGCCAGGGCAACCCTGCCGAGGACCCCAGGTTTGAAATCGTGGAGCACTTTGGCATCGCATGGTTCACGTTT
GAGCTGGTTGCTAGGTTTGCTGTGGCACCTGACTTCCTCAAGTTTTTCAAGAATGCCCTAAACCTTATCGACCTCATATC
CATTGTCCCTTTTTACATCACTCTGGTGGTGAACCTCGTGGTGGAGAGCACGCCTACCCTGGCCCATCTGGGCAGAGTGT
CCCAGGTCCTGAGGCTGATGCGGATTTTCCGCATCTTAAAGCTGGCCAGACACTACACTGGCCTCCGCTCCCTGGGAGCC
ACCTTGAAGTACAGTTACAAAGAAGTAGGGCTGCTCCTGCTCTACCTCTCCGTGGGCATTTCCATCTTCTCTGTGGTGGC
CTACACCATTGAAAAGGAAGAGAATGAGGGCCTGGCCACCATACCTGCTGGCTGGTGGTGGGCCACTGTCAGTATGACCA
CTGTGGGGTATGGAGATGTGGTCCCAGGGACCACAGCAGGGAAGCTGACTGCTTCTGCCTGCATCCTGGCAGGTATCCTA
GTGGTGGTTCTGCCCATCACCTTGATCTTCAATAAGTTCTCCCACTTCTATCGGCGCCAAAAGCAACTCGAGAGTGCCAT
GCGCAGCTGTGACTTTGGGGATGGTATGAAGGAGGTCCCTTCCATCAATTTAAGGGATTACTATGCCCATAAAGTTAAAT
CCCTCATGGCAAGCCTGACGAACATGAGCAGGAGTTCCCCAAGCGAACTAAGTTTAAATGATTCCCTACATTAG
ORF - retro_chof_55 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
55.73 % |
Parental protein coverage: |
90.02 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VNLNVGGFKQSVDQSTLLRFPHTRLGRLLSCRSEEAILELCDDYSVADREYYFDRNPSLFRYVLNFYYTG |
| ...NVGGFK......TLLRFP.TRLGRLL.C.S.EAILELCDDY....RE.YFDRNP.LF.YVL.FY.TG |
Retrocopy | IRINVGGFKRRLRSHTLLRFPETRLGRLLLCHSREAILELCDDYDDVQREFYFDRNPELFPYVLHFYHTG |
|
Parental | KLHVMEELCVFSFCQEIEYWGINEFSLDACCSSRYQERKEEGRGKAWEQKSHGASTESSFEDSSLFEKEL |
| KLHVM.ELCVFSF.QEIEYWGINEF..D.CCS..Y..RK.E.....W...S...ST.SSF.....F.... |
Retrocopy | KLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVEPEQEKWDEQSDQESTTSSFDEILAFYNDA |
|
Parental | EKFDRLWFGQLRRKVWIRMENPAHCLSAKLIAISSLSVVLASIVAMCVHSMSEFQNEDGE---VDDPVLE |
| .KFD....G..RR..W....NP..........I.S..VVL.SI..MC..S...FQ..D.......DP..E |
Retrocopy | SKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVVLGSIITMCLNSLPDFQIPDSQGNPAEDPRFE |
|
Parental | GVEIACIAWFTGELAVRLGAAPCQKRFWTNPLNIIDFVSIVPFYATLAVDTKEEESEDIENMGKVVQILR |
| .VE...IAWFT.EL..R...AP....F..N.LN.ID..SIVPFY.TL.V....E........G.V.Q.LR |
Retrocopy | IVEHFGIAWFTFELVARFAVAPDFLKFFKNALNLIDLISIVPFYITLVVNLVVESTPTLAHLGRVSQVLR |
|
Parental | LMRIFRILKLARHSVGLRSLGATLRHSYHEVGLLLLFLSVGISIFSVLIFSVEKDEPTAGLTSIPICWWW |
| LMRIFRILKLARH..GLRSLGATL..SY.EVGLLLL.LSVGISIFSV.....EK.E...GL..IP..WWW |
Retrocopy | LMRIFRILKLARHYTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAYTIEKEE-NEGLATIPAGWWW |
|
Parental | ATISMTTVGYGDTHPVTLAGKLIASTCIICGILVVALPITIIFNKFSKYYQKQKDIDVDQGGEDPPEKCH |
| AT.SMTTVGYGD..P.T.AGKL.AS.CI..GILVV.LPIT.IFNKFS..Y..QK.........D...... |
Retrocopy | ATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGDGMK |
|
Parental | ELPYFNIRDIYAQRVHAFLASLTSV |
| E.P..N.RD.YA..V....ASLT.. |
Retrocopy | EVPSINLRDYYAHKVKSLMASLTNM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_55 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.