RetrogeneDB ID: | retro_chof_616 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_126952:838..1402(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TDP2 | ||
Ensembl ID: | ENSCHOG00000012012 | ||
Aliases: | None | ||
Description: | tyrosyl-DNA phosphodiesterase 2 [Source:HGNC Symbol;Acc:17768] |
Percent Identity: | 71.81 % |
Parental protein coverage: | 51.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | HEEGYFTAIMLKKSRVKLKSQEIIPFPSTKMMRNLLCVNVSVSGNELCLMTSHLESTKGHTTERINQLKV |
HEEGYFTAIM..........QEIIPFPSTKM.RNLL.V..SVSGNE.CLMTSHL.STK.H..E.INQLKV | |
Retrocopy | HEEGYFTAIMXXXXXXXXXXQEIIPFPSTKMVRNLL*VHMSVSGNEFCLMTSHLGSTKRHAKEQINQLKV |
Parental | VLKKMQEAPESATVIFAGDTNLRDQEIKC-GYPDSILDVW-FGGKPEHCQYT-DMQKNSNLGIPSSCKLG |
VLK.MQE.PESATVIFAG.T.LRDQ..KC.G.P..ILDVW.FGGKPEHCQ.T.D.Q.N.NL.IP..CKL. | |
Retrocopy | VLKRMQEVPESATVIFAGNTSLRDQVTKCGGLPNNILDVWEFGGKPEHCQCTWDIQMNFNLRIPGTCKLR |
Parental | FDQIFSRAAAEGDHIIP-NLGLLVLEKLDCGRLLSDHWGLLCSLGIIL |
FDQ.F.RAAAEG..IIP..L.LL.LEKLDC.R..SD.WGLLCSL.IIL | |
Retrocopy | FDQLFFRAAAEGGCIIP*SLYLLRLEKLDCSRFPSDDWGLLCSLDIIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012012 | 2 retrocopies |
retro_chof_2007, retro_chof_616 ,
|
Callithrix jacchus | ENSCJAG00000006074 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010113 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000016299 | 2 retrocopies |