RetrogeneDB ID: | retro_chof_733 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_14174:734..1234(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAF2 | ||
Ensembl ID: | ENSCHOG00000013975 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) complex I, assembly factor 2 [Source:HGNC Symbol;Acc:28086] |
Percent Identity: | 87.57 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GWFQSLFRGLWRALSKEVKQHVGTDQFGNKYYYISEHKNWRGQTIREK-IVEAANIKEVGYEIQDIPTEW |
GW.QSLF.GLWRALSKEVKQHVGTDQFGNKYYYISEHKNWRGQTI.EK.IVEAANIKEVGYEIQDIPTEW | |
Retrocopy | GWSQSLFHGLWRALSKEVKQHVGTDQFGNKYYYISEHKNWRGQTIQEKRIVEAANIKEVGYEIQDIPTEW |
Parental | EAWIRRTRKIPPTMEEILKNEKHREEMKIKSKELNEKEKLLNK-ESKEELLALPVQTQIKGHASAPYYGK |
EAWIRRTRK.PP.MEE.LK.EK.REEMKIK.KEL.EKEKLL.K.ESKEEL.A.PVQTQIKGH.SAP..GK | |
Retrocopy | EAWIRRTRKVPP-MEEVLKKEKYREEMKIKRKELYEKEKLLSK<ESKEELFAPPVQTQIKGHVSAPSCGK |
Parental | EEPSEDPTSTGKTFQPGSWMPQDGKSQNK |
E.PSEDPTSTGKTFQPGSWMPQD.KS.NK | |
Retrocopy | EKPSEDPTSTGKTFQPGSWMPQDVKSRNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013975 | 2 retrocopies |
retro_chof_1922, retro_chof_733 ,
|
Callithrix jacchus | ENSCJAG00000015375 | 1 retrocopy | |
Homo sapiens | ENSG00000164182 | 1 retrocopy |