RetrogeneDB ID: | retro_chof_848 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_155258:3520..4402(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBA2 | ||
Ensembl ID: | ENSCHOG00000011975 | ||
Aliases: | None | ||
Description: | ubiquitin-like modifier activating enzyme 2 [Source:HGNC Symbol;Acc:30661] |
Percent Identity: | 80.54 % |
Parental protein coverage: | 56.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | WELA-AMGGGWVLVVGAGGIGCKLLKNLVCTGFSHISLIDLDASDVSNLNRQFLFQKKHIGRSKAQVAEE |
W.L..A..GGWVLVV...GI.C..LKNLV.TGFSHI.L.DLD..DVSNLN.QFLFQKKH.GRSKAQ.A.E | |
Retrocopy | WKLTEAVAGGWVLVVCTDGISCEPLKNLVLTGFSHINLMDLDTVDVSNLNKQFLFQKKHVGRSKAQGAKE |
Parental | SVLQFYPKAVFIAYHDSIMNPDYIVEFFREFILVMNALGNRAARNHVNRMCLAADVPLI-ESGTAGYLGQ |
SVLQFYPKA..IA.HDSIMNP.Y.VE.F..FILVMNAL.NRAA...VNRMCLAADVPL..ESGTAGYL.Q | |
Retrocopy | SVLQFYPKANLIADHDSIMNPNYNVEIF*QFILVMNALDNRAAHKYVNRMCLAADVPLM<ESGTAGYLRQ |
Parental | VTIIKKGVTECYECHPKPT-QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAA |
VTI..KG.TECYECHPKPT.QRTFPGCTIRNT.SEPIHCIVWAKYLFNQLF.EEDAD.EVSPDRA.PEAA | |
Retrocopy | VTITEKGMTECYECHPKPT<QRTFPGCTIRNTLSEPIHCIVWAKYLFNQLFWEEDADHEVSPDRAYPEAA |
Parental | WEPMEAEARARASNEDGDIKRISTKEWAKSTGYDPIKLFTKLFKDDIRYLLTMDKLWRKRK-PPVPLDWA |
.EPMEAEARARASNEDGD.K.ISTKE..KSTGYDP.KLFTKLF.DDIR.LLTM..LW.KRK..PVPLDWA | |
Retrocopy | SEPMEAEARARASNEDGDSKCISTKE*EKSTGYDPVKLFTKLFNDDIRHLLTMAILWQKRK<TPVPLDWA |
Parental | EVQSQGEETNASDQQNEP |
EVQSQGEE.NA.DQQNEP | |
Retrocopy | EVQSQGEEINATDQQNEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011975 | 3 retrocopies |
retro_chof_1034, retro_chof_548, retro_chof_848 ,
|
Myotis lucifugus | ENSMLUG00000003047 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011934 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009837 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021113 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000002876 | 1 retrocopy |