>retro_chof_906
ATTTTAAGGAACTTTGCTCTTCCTATTTCATGGATAACTGAAAACACTCTTTATCGGCTGGATGTGGGTTGGCCTAAGTA
TTCAGAAAACTTTACTGGGGCAACATTTTATGTCACAGTTGACTCCCTCAACGGATTGGTTTATGTAGGGCCAAGAAGGT
ATAGCATCCCAAAGGTGTTTGTGTTCACAGGATATTTTCTGTGAGCCTGGAATCTCACTGCAGACACACCTCATGGCATG
TGTGCAGCCAGCACATTACACGAGCAATCTGTCTGGATCATGGATGTAGGAAGTGGATCCTATGGTCATACTGTTAAAAA
ATGCAATTCCTTTGGTGATCTTGTTCAAGGCCTGGGTACCCCAAGCCAAAAAGGCACTGGTTTGAATCCCCCGCAGTTAG
ATAACCCTGCAGAATCACAGGTAGAGGACACAGGAGACATTTACATTGTAGAAGGAGATGGAGAGCTGAATAACAGATTG
ORF - retro_chof_906 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.54 % |
Parental protein coverage: |
51.27 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ILRNFALHVSWRTKNTLYRLDVDWPRYPEYFTGATFCVAVDPLSGLVYVAQRGDHLPKVLVFTQDGYFLR |
| ILRNFAL..SW.T.NTLYRLDV.WP.Y.E.FTGATF.V.VD.L.GLVYV..R....PKV.VFT..GYFL. |
Retrocopy | ILRNFALPISWITENTLYRLDVGWPKYSENFTGATFYVTVDSLNGLVYVGPRRYSIPKVFVFT--GYFL* |
|
Parental | AWNHTVDTPHGMFAASTLHEQSVWITDVGSGSFGHTVKKYSSFGDLVQVLGTPGKKGTGLNPLQFDNPAE |
| AWN.T.DTPHGM.AASTLHEQSVWI.DVGSGS.GHTVKK..SFGDLVQ.LGTP..KGTGLNP.Q.DNPAE |
Retrocopy | AWNLTADTPHGMCAASTLHEQSVWIMDVGSGSYGHTVKKCNSFGDLVQGLGTPSQKGTGLNPPQLDNPAE |
|
Parental | LYVEDTGDIYIVDGDGGLNNRL |
| ..VEDTGDIYIV.GDG.LNNRL |
Retrocopy | SQVEDTGDIYIVEGDGELNNRL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_906 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.