>retro_chof_909
TGCGCTCATTGTCATTCTACTGGGTTGATTTTGGACAGTGGAGTCACTCATACCACTGCAATTCCAGTCCACGATGGCTA
TGTCCTTCAACAAGGCATTGTGAAATACCCTCTTACTGGAGACTTTATTATGAAGTGTGGAGAACTCTTCCAAGAAATGA
ATATAGAATTGATCCCTCCATATATGACTGCATCAAAAGAAGCTGTTCATGAAGGAACTCCAGTAAACTGGAAAAGAAAA
GAGAAGTTGCCACAGGTTACAAGGTCATGGCACAATTATATGTGTAATTGTGTTATCCAGGATTTTCAAGCTTTAGAACT
GCAAGTATCAGATTTCAACTTATGATGAACTAGTAGCTGCACAGATGCTAACTGTTCACTATGAATTTTCCAGTAGCTAT
AACTGTGATTTTGGTGCAGAACAGCTAAGGATTCCTGAAGGATTATTTGACCCTTCCAATATAAAAGGGTTTATCAGGAA
ATACAATGCTAGGAGTCAGTCACGTTGTCACCACAAGTGTTGGTTTTGTGATATTGGTATCAGACCAGGTCTTTATGGCA
GTGTGATAGTGGCAGGAGGAAACACGATAATACAGAGCTTTTCTGACAGGTTGAACAGAGAGCTCTCTCAAAAAACTACC
TCCCCCACCCCGTATGCGGTTGAAACATACAAGTAATACAACAGTTGAACGAAGGTTTAGTTCATGGATTGGTGGCTCCA
TTTTAGCTTCTTTG
ORF - retro_chof_909 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.11 % |
Parental protein coverage: |
60.85 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | CKTAVLTAFACRTGLIWXXEANVVEFYVLQQGIVKSPLAGDFITMQCRELFQEMNIELIPPYMIASKEAV |
| C.....T......G........V...YVLQQGIVK.PL.GDFI.M.C.ELFQEMNIELIPPYM.ASKEAV |
Retrocopy | CAHCHSTGLILDSGVTHTTAIPVHDGYVLQQGIVKYPLTGDFI-MKCGELFQEMNIELIPPYMTASKEAV |
|
Parental | REGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSD-STYDEQVAAQMPTVHYEFPNGYNCDFG |
| .EG.P.NWKRKEKLPQVTRSWHNYMCNCVIQDFQA..LQVSD.STYDE.VAAQM.TVHYEF...YNCDFG |
Retrocopy | HEGTPVNWKRKEKLPQVTRSWHNYMCNCVIQDFQALELQVSD>STYDELVAAQMLTVHYEFSSSYNCDFG |
|
Parental | AERLKIPEGLFDPSNV-KGLSGNTMLGVSHVVTTSVG-MCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNR |
| AE.L.IPEGLFDPSN..KGLSGNTMLGVSHVVTTSVG..CDI.IRPGLYGSVIVAGGNT.IQSF.DRLNR |
Retrocopy | AEQLRIPEGLFDPSNI>KGLSGNTMLGVSHVVTTSVG<FCDIGIRPGLYGSVIVAGGNTIIQSFSDRLNR |
|
Parental | ELSQKT-PPSMRLKL-IANNTTVERRFSSWIGGSILASL |
| ELSQKT.PP..R..L....NTTVERRFSSWIGGSILASL |
Retrocopy | ELSQKT>PPPPRMRLKHTSNTTVERRFSSWIGGSILASL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_909 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.