>retro_cjac_2573
GCTGGAATGCCAGTCACTCTCACCATCTCCACCAGCAGTCTCAACCTCATGGCCACAGACTGCAAGCAGATCATCGCCAA
CCACCACGTGCAATCTATCTCATTTGCATCCGGCGGGGATCCGGACACAGCTGAGTATGTCGCCTATGTTGCCAAAGACC
CTGTGAATCAGAGAGCCTGCCACATTCTGGAGTGTCCTGAAGGGCTTGCCCAGGATGTTATCAGCACCATTGGCCAGGCC
TTCGAGTTGCGCTTCAAACAATACCTCAGGAACCCACCCAAACTGGTCCCCCCCCATGACAGGATGGCTGGCTTTGATGG
CTCAGCTTGGGATGAAGAGGAGGAAGAGCCACCTGACCATCAGCACTATGACTTCCCAAGGGAAGGAATCCCCTCTTGGG
GGGGTAGTAGACATGAGGCTTCAGGAAGGAGCCACTCTACTCGCTGCCCAGACCCCCAGCCACTTGGGAGCTACACTGCC
TATAGGACAGCCTGTTGGGGGAGATCCAGAAGTCCGCAAACAGATGCCACTTCCACCACCCTGTCCAGCAGGCGGAGAGC
CCTTTGATGATCCCTCCTACCGCAACGTCCAGAACCTAGACAAGGCCCAGCAAGCAGGGGGTGGTGCTGGGCCCCCCAAT
CCTGCCATCAATGGCAGCGTGCCCCAGGACCTATTTGACATGAAGCCCTTTGAAGATGTTCTTCGGGTGCCTCCACCTCC
CCAGTCGGTGACCATGGCTGAGCAGCTCCGAGGGGAGCCCTGGTTTCATGGGAAGCTGAGCCGGCGGGAGGCTGAGGCAC
TGCTGCAGCTCAATGGGACTTCCTGGTGCGGGAGAGCACGACCACACCTGGCCAGTATGTGCTCACTGGCTTGCAGAGTG
GGCAGCCCAAGCATCTGCTACTGATGGACCCTGAGGGTGTGGTATGGACAAAGGATCACCACTTTGAGAGTGTCAGTCAC
CTCATCAGCTACCACACGGACAATCACTTGCCCATCATCTCTGCGGGCAGCGAACTGTGTCTACAGCAACCTGTGGAGCG
GAAACTG
ORF - retro_cjac_2573 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.18 % |
Parental protein coverage: |
60.66 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | AGMPITLTISTSSLNLMAADCKQIIANHHMQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLA |
| AGMP.TLTISTSSLNLMA.DCKQIIANHH.QSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLA |
Retrocopy | AGMPVTLTISTSSLNLMATDCKQIIANHHVQSISFASGGDPDTAEYVAYVAKDPVNQRACHILECPEGLA |
|
Parental | QDVISTIGQAFELRFKQYLRNPPKLVTPHDRMAGFDGSAWDEEEEEPPDHQYYNDFP-GKEPPLGGVVDM |
| QDVISTIGQAFELRFKQYLRNPPKLV.PHDRMAGFDGSAWDEEEEEPPDHQ.Y.DFP.GKE.PLGGVVDM |
Retrocopy | QDVISTIGQAFELRFKQYLRNPPKLVPPHDRMAGFDGSAWDEEEEEPPDHQHY-DFP>GKESPLGGVVDM |
|
Parental | RLREGATPPTAQTPSHLGATLPIGQPVGGDPEVRKQMPLPPPCPAGRELFDDPSYVNVQNLDKARQAGGG |
| RL.EGAT...AQTPSHLGATLPIGQPVGGDPEVRKQMPLPPPCPAG.E.FDDPSY.NVQNLDKA.QAGGG |
Retrocopy | RLQEGATLLAAQTPSHLGATLPIGQPVGGDPEVRKQMPLPPPCPAGGEPFDDPSYRNVQNLDKAQQAGGG |
|
Parental | AGPPNPAINGSAPRDLFDMKPFEDALRVPPPPQSVTMAEQLRGEPWFHGKLSRREAEALLQLNG-DFLVR |
| AGPPNPAINGS.P.DLFDMKPFED.LRVPPPPQSVTMAEQLRGEPWFHGKLSRREAEALLQLNG.DFLVR |
Retrocopy | AGPPNPAINGSVPQDLFDMKPFEDVLRVPPPPQSVTMAEQLRGEPWFHGKLSRREAEALLQLNG<DFLVR |
|
Parental | ESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQPVER |
| ESTTTPGQYVLTGLQSGQPKHLLL.DPEGVV.TKDH.FESVSHLISYH.DNHLPIISAGSELCLQQPVER |
Retrocopy | ESTTTPGQYVLTGLQSGQPKHLLLMDPEGVVWTKDHHFESVSHLISYHTDNHLPIISAGSELCLQQPVER |
|
Parental | KL |
| KL |
Retrocopy | KL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .02 RPM |
36 .41 RPM |
SRP051959_heart |
0 .00 RPM |
30 .15 RPM |
SRP051959_kidney |
0 .00 RPM |
34 .10 RPM |
SRP051959_liver |
0 .02 RPM |
17 .26 RPM |
SRP051959_lung |
0 .00 RPM |
27 .59 RPM |
SRP051959_lymph_node |
0 .05 RPM |
33 .42 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
10 .48 RPM |
SRP051959_spleen |
0 .00 RPM |
28 .91 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_2573 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_2573 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_2573 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.