RetrogeneDB ID: | retro_cjac_2781 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 6:158031341..158031804(+) | ||
Located in intron of: | ENSCJAG00000006087 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000006116 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD2 | ||
Ensembl ID: | ENSCJAG00000014605 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.96 % |
Parental protein coverage: | 65.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ELDSDKDETGAYLIDRDPTYFGPILNYLRHGKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENR |
....DK.E..A.LI..D.T.FGP.LN.LRHGK..I.K..AEEGVLE.AEFY...SL..LVK..IR..E.. | |
Retrocopy | QANTDKEEIFAHLIGKDCTCFGPALNHLRHGKTVISKDIAEEGVLEKAEFYDMTSLIKLVKDKIREQESK |
Parental | TSQ-GPVKHVYRVLQCQEEELTQMVSTMSDG-WKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGI |
.SQ.G.VKHV..VLQC..E.LTQ.V..MS.G..KFEQL.S..SSYNYG..D.A.F.CV.SREL....... | |
Retrocopy | ASQ<GAVKHVSGVLQC-PEGLTQVVPSMSAG<LKFEQLGSFDSSYNYGDADRAKFPCVLSRELRSTPYSM |
Parental | VIEPSEKAKILQERGSRM |
...PS.KA.ILQE.GSR. | |
Retrocopy | ASRPSKKARILQE*GSRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .22 RPM | 4 .59 RPM |
SRP051959_heart | 0 .21 RPM | 5 .77 RPM |
SRP051959_kidney | 0 .64 RPM | 6 .72 RPM |
SRP051959_liver | 0 .06 RPM | 3 .60 RPM |
SRP051959_lung | 0 .20 RPM | 7 .08 RPM |
SRP051959_lymph_node | 0 .07 RPM | 5 .84 RPM |
SRP051959_skeletal_muscle | 0 .20 RPM | 4 .19 RPM |
SRP051959_spleen | 0 .15 RPM | 5 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021231 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014605 | 1 retrocopy |
retro_cjac_2781 ,
|
Echinops telfairi | ENSETEG00000013965 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008616 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009629 | 1 retrocopy |