>retro_cjac_2904
AATGCCACCAGCTGGTCCAAAGGGAAGCTCCAGGAGCTCCTGGTGGGCATCGTTGTGGAGGATGAAGCCGGCCGCTGAGA
AATCAGTGAGCTGAAGCAGGTGGGAGGTCAGGCTTCTTGCAGCAGCTGCAAAGCAAAGCTGATTTTTTTCTATTAGTGGA
ACATCAAACTGGGCTAGAAAGATATCATTAAAGAATCTGATGTGAAGCACAAGGGATTGATTGAAATACCTAATCTTTCT
GAAGACAATAAAGTAGACAATACTAAGGTGAACATGAGTAAAAAGAAAGGAGATGGGGATACACTGCAGGATCTTATGAA
AACTGCAGGCACTGCCAAGGTTAGGGAGGAGGTCCTTGGAGATTACTGGAAGGCACTTAAAACAAAATTTACAATGGGAA
TGGCTTTACCAATGAAAACTATGGCAACCTAGGAATTGACTGTTAACATAAAACGGAGGGAGAATATCTTCCAGGTTCAG
GCCTCATCTCGAGTGTCACTGGGTGTAAGGATTCCCACTGTGACTCTTCCCATGAGGGAACAGTTTGACACAACTGTAGA
GCAGCTGTAAAGCATCTTCATTGTGAAGGATTTGGTGCAAAAATTTTCTAAATCTCCTGCTGTATTAGAAGCTGAAAAGG
GAGGGAAATTCCAAATGTTTGATGGGAACATCACTGATGAATGTACAGAATTATTAACCAAAAAA
ORF - retro_cjac_2904 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.89 % |
Parental protein coverage: |
69.7 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NATSWSKGKLQELLVGIVVENETGRGEISERKQVEGEASCSSRKGKLIFLYEWNIKLDWKGILKESGVKH |
| NATSWSKGKLQELLVGIVVE.E.GR.EISE.KQV.G.ASCSS.K.KLIF.Y.WNIKL..K.I.KES.VKH |
Retrocopy | NATSWSKGKLQELLVGIVVEDEAGR*EISELKQVGGQASCSSCKAKLIFFY*WNIKLG*KDIIKESDVKH |
|
Parental | KGLIEIPNLSEENE-DDTEVNVSKKKGDGDILKDLMKTAGTAKVR-EALGDYLKALKMEFTVGMILPTKS |
| KGLIEIPNLSE.N..D.T.VN.SKKKGDGD.L.DLMKTAGTAKVR.E.LGDY.KALK..FT.GM.LP.K. |
Retrocopy | KGLIEIPNLSEDNKVDNTKVNMSKKKGDGDTLQDLMKTAGTAKVREEVLGDYWKALKTKFTMGMALPMKT |
|
Parental | MATQELTGKRKLSEN--TLQASSPVVLGVRIPSVALRMMELFDTTV-VLYSIFTVKDLVQKFSKSTAVLE |
| MAT.ELT...K..EN....QASS.V.LGVRIP.V.L.M.E.FDTTV..L.SIF.VKDLVQKFSKS.AVLE |
Retrocopy | MAT*ELTVNIKRRENIFQVQASSRVSLGVRIPTVTLPMREQFDTTVEQL*SIFIVKDLVQKFSKSPAVLE |
|
Parental | AEKGGKFQMFDGNITGEYLELLANK |
| AEKGGKFQMFDGNIT.E..ELL..K |
Retrocopy | AEKGGKFQMFDGNITDECTELLTKK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .00 RPM |
4 .42 RPM |
SRP051959_heart |
0 .00 RPM |
5 .24 RPM |
SRP051959_kidney |
0 .00 RPM |
3 .00 RPM |
SRP051959_liver |
0 .00 RPM |
3 .01 RPM |
SRP051959_lung |
0 .02 RPM |
11 .00 RPM |
SRP051959_lymph_node |
0 .00 RPM |
13 .47 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
1 .75 RPM |
SRP051959_spleen |
0 .00 RPM |
8 .99 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_2904 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_2904 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_2904 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.