RetrogeneDB ID: | retro_cjac_3222 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 9:60189096..60189593(+) | ||
Located in intron of: | ENSCJAG00000001472 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000018863 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.84 % |
Parental protein coverage: | 53.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | EVVLPPESQEVDWEVELAVVIGKKGK-HIKATDAMAHVAGFTVAHDVSARDW-QMRRNGKQWLLGKTFDT |
EVVL..ESQE..WEV..A.VIGKK....IKATDA.AH.AGFTV.HDV.A.D..QMR..GK.WLLGK...T | |
Retrocopy | EVVLTMESQEIEWEVGDAMVIGKKDR<DIKATDAIAHAAGFTVSHDVTAPDL>QMRCKGKHWLLGKISGT |
Parental | FCPLGPALVTKDSVADPHNLKICCRVNGEVVQSSNTKQMVFKTEELIAWVSQFVTFYPGDVILTGTPPGV |
FCPLGP.LVTKDSVA.PHNLKICC.V...V.Q..NT.QMVFKTEE.I.WVSQFVTFYPGDVILTGT.PG. | |
Retrocopy | FCPLGPILVTKDSVAEPHNLKICC*VKENVIQ--NTHQMVFKTEEPITWVSQFVTFYPGDVILTGTSPGI |
Parental | GVFRKPPVFLKKG-DEVQCEIEELGVIINKVV |
..FRK.PV.L..G.DEVQCEIEELGVIINKVV | |
Retrocopy | SEFRKLPV-LRRG<DEVQCEIEELGVIINKVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 4 .68 RPM |
SRP051959_heart | 0 .02 RPM | 8 .91 RPM |
SRP051959_kidney | 0 .02 RPM | 16 .82 RPM |
SRP051959_liver | 0 .11 RPM | 15 .47 RPM |
SRP051959_lung | 0 .65 RPM | 6 .20 RPM |
SRP051959_lymph_node | 0 .00 RPM | 4 .09 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 16 .31 RPM |
SRP051959_spleen | 0 .29 RPM | 6 .68 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018863 | 1 retrocopy |
retro_cjac_3222 ,
|
Homo sapiens | ENSG00000144199 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016246 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012859 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000008 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012057 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012214 | 1 retrocopy |