RetrogeneDB ID: | retro_cjac_3689 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | ACFV01195151.1:698..1366(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2S | ||
Ensembl ID: | ENSCJAG00000000874 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2S [Source:HGNC Symbol;Acc:17895] |
Percent Identity: | 90.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MNSNVENLPPHIIRLVYKEVTTLTTDPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGVFRMKLLLGKDF |
MNSNVENLPPHII.LVYKEVTTLTTDPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGG.FRMKLLLGKDF | |
Retrocopy | MNSNVENLPPHIICLVYKEVTTLTTDPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF |
Parental | PASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRH-VLLTIKCL-LIHPNPESALNEEAGRLLL |
PASPPKGYFLTKIFHPNVGANGEICVNVL.RDWTAELGIR..VLLTI.CL..IHPNPE.ALNEEAGRLLL | |
Retrocopy | PASPPKGYFLTKIFHPNVGANGEICVNVL*RDWTAELGIRQ<VLLTIRCL<VIHPNPEPALNEEAGRLLL |
Parental | ENYEEYAAR-ARLLTEIHGGAGGPSGRAEAGRALASGTAASSTDPGAPG-GPGGAE--GPMAKKHAGERD |
ENYEEY.AR.ARLLTEIHG.AGGPSGRAEAGRALASG.AASSTDPGAPG.GPG..E..GP.AKKHAGE.D | |
Retrocopy | ENYEEYVAR<ARLLTEIHGDAGGPSGRAEAGRALASGSAASSTDPGAPG<GPGWGEAEGPRAKKHAGE*D |
Parental | KKLAAKKKTDKKRALRRL |
KKLAAKKKTDKKRAL.RL | |
Retrocopy | KKLAAKKKTDKKRALQRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 5 .15 RPM |
SRP051959_heart | 0 .00 RPM | 4 .07 RPM |
SRP051959_kidney | 0 .00 RPM | 2 .06 RPM |
SRP051959_liver | 0 .00 RPM | 1 .06 RPM |
SRP051959_lung | 0 .02 RPM | 3 .76 RPM |
SRP051959_lymph_node | 0 .00 RPM | 3 .58 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 6 .09 RPM |
SRP051959_spleen | 0 .00 RPM | 3 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000874 | 3 retrocopies |
retro_cjac_1995, retro_cjac_3689 , retro_cjac_406,
|
Callithrix jacchus | ENSCJAG00000005098 | 2 retrocopies | |
Homo sapiens | ENSG00000108106 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060860 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000011507 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000016930 | 2 retrocopies |