RetrogeneDB ID: | retro_cjac_379 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:1388300..1389446(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDX6 | ||
Ensembl ID: | ENSCJAG00000013591 | ||
Aliases: | None | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box helicase 6 [Source:HGNC Symbol;Acc:2747] |
Percent Identity: | 79.07 % |
Parental protein coverage: | 79.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIV |
C.K.ELLMGIF..G.EK.SPIQEESIPIALSGRDILARAKNGTGKS.AYL..LLE.LDLKKDNIQA.VIV | |
Retrocopy | CWKWELLMGIF*VGLEKSSPIQEESIPIALSGRDILARAKNGTGKSHAYLFSLLEWLDLKKDNIQAVVIV |
Parental | PTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPG-RILDLIKKGVAKVD-H |
PT..LALQVSQICI..SKH...AKV...TGGTNL.DD.MRLDDT.HVVIA.PG.RILDLIKKGVAKV... | |
Retrocopy | PTGDLALQVSQICIHDSKHVRWAKVIVITGGTNLGDDTMRLDDTMHVVIAAPG<RILDLIKKGVAKVE>A |
Parental | VQMIVL-DEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQ-KPYEINLMEELTLK |
.QMI.L...ADKLLSQDFVQIME..ILT.PKN.QILLYS.TFPL.VQKFM.S.LQ..PYEINLMEELT.. | |
Retrocopy | DQMIALIEQADKLLSQDFVQIMECLILTVPKNSQILLYSTTFPLNVQKFMSSQLQ<EPYEINLMEELTVT |
Parental | GVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVF |
.VTQY.A.VTE.QKVHCLN.LFSRLQINQSIIFCN.SQ.VE.LA.KISQLGYSCFYIHAKMRQEH.N.VF | |
Retrocopy | RVTQYSACVTEHQKVHCLNPLFSRLQINQSIIFCNFSQ*VEFLA-KISQLGYSCFYIHAKMRQEHQNHVF |
Parental | HDF-RNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNL |
HDF..NGLC..LV.TDLFTRGI..QAV.V.INFDFP.LA.T.LH.IGRS..FGH...AINL.TYDD.FNL | |
Retrocopy | HDF>QNGLCHDLVGTDLFTRGISMQAVTVIINFDFPNLAKTHLHCIGRSSCFGHVCSAINLMTYDDHFNL |
Parental | KSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP |
K...EQLGTEIK.IPSNIDKSLYVAEYHSEPVEDEKP | |
Retrocopy | KNTKEQLGTEIKLIPSNIDKSLYVAEYHSEPVEDEKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 114 .62 RPM |
SRP051959_heart | 0 .00 RPM | 133 .48 RPM |
SRP051959_kidney | 0 .00 RPM | 119 .43 RPM |
SRP051959_liver | 0 .00 RPM | 69 .05 RPM |
SRP051959_lung | 0 .00 RPM | 187 .12 RPM |
SRP051959_lymph_node | 0 .00 RPM | 197 .43 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 126 .99 RPM |
SRP051959_spleen | 0 .00 RPM | 158 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1224 |
Pan troglodytes | retro_ptro_838 |
Pongo abelii | retro_pabe_1018 |
Macaca mulatta | retro_mmul_1300 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012442 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013591 | 3 retrocopies |
retro_cjac_1427, retro_cjac_1924, retro_cjac_379 ,
|
ENSG00000110367 | 0 retrocopies |
|
|
Gorilla gorilla | ENSGGOG00000016751 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018651 | 2 retrocopies | |
Mus musculus | ENSMUSG00000032097 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007372 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007978 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003942 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004353 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000012453 | 4 retrocopies |