RetrogeneDB ID: | retro_cjac_4140 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:15043395..15043987(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC35C2 | ||
Ensembl ID: | ENSCJAG00000017091 | ||
Aliases: | None | ||
Description: | solute carrier family 35 (GDP-fucose transporter), member C2 [Source:HGNC Symbol;Acc:17117] |
Percent Identity: | 76.73 % |
Parental protein coverage: | 50.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | YTMTKSSAVLFILIFSLIFKLEELR-AALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWT |
.T.T.SS..LFI.IFSL..KLEE....ALVLV.LLI.GGLFMFT.KSTQ.NVEGFALVLG.S.IGGI..T | |
Retrocopy | FTITRSSTILFIFIFSLLSKLEEVQ<MALVLVILLITGGLFMFTFKSTQPNVEGFALVLGTSLIGGIH*T |
Parental | LTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPL-FAVFEGLHLSTSEKIFRFQDTGLLLRVLG-SLFLG |
LTQ..LQK..LGLQ..ID..FHLQPLMFLG.FPL.FAV.E.LHLSTS.KIF.FQDTGLLL..LG.SLFLG | |
Retrocopy | LTQTFLQKTDLGLQDAIDSVFHLQPLMFLGFFPL>FAVYESLHLSTSKKIFHFQDTGLLLGYLG<SLFLG |
Parental | GILAFGLGFSEFLLVSRTSSLTLSIAGIFK-EVCTLLLAAHLLGDQISLLNWLGFALCLSGI |
G.L.FGLGFSEFLLVSR.SSLTLSIAGI.K.EVC.LLLAAHL.GDQ.S.LNWLGF.LCLSGI | |
Retrocopy | GLLTFGLGFSEFLLVSRPSSLTLSIAGIWK<EVCSLLLAAHLVGDQLSHLNWLGFLLCLSGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 10 .67 RPM |
SRP051959_heart | 0 .00 RPM | 7 .44 RPM |
SRP051959_kidney | 0 .00 RPM | 12 .31 RPM |
SRP051959_liver | 0 .00 RPM | 5 .65 RPM |
SRP051959_lung | 0 .00 RPM | 10 .77 RPM |
SRP051959_lymph_node | 0 .00 RPM | 12 .17 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 5 .94 RPM |
SRP051959_spleen | 0 .00 RPM | 10 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011583 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000017091 | 1 retrocopy |
retro_cjac_4140 ,
|
Homo sapiens | ENSG00000080189 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014052 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006880 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011091 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013582 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005486 | 1 retrocopy |