>retro_cjac_595
GCGCGGCTCCAGCTCCAGAAATCCCAGTACCTGCAACTGGGCCCGAGCTGCAACCAGTACTATGGCGGGTCCTTGCTCAA
TGTGAACCAGATTGGGAGTGGCACCATGCACCTGCCCTTCCAGACCCCCTTCCAATCCTCAGGCCTGGACACCAGCTGGA
CTACCTGGCACCACGGGCTGGTGGACAGGGTGTACCGAGAGTGTGGCTGGCTCGGCTCCCCGCACCGCCCGCCCCTGTCA
GTGGACAAACGCGGACGGCAGGCCGACAGCTGCCCCTACGGCACCGTGTACCTCCGGCCACCCGCGGACACCAGCTGGAG
AAGGACCAATTCTGACTCCGCACTGCACCAGAGCACAATGACGCTCACGCAGCCAGAATCCCTTACCAATGGGTCCCAGG
ACGTGAACCAGAAAAAAGTCTTACTGTTAACAGTCCCAGGAATGGAAGAGACCACATCAGAGGCAGACAAAACCTTTCCA
AGAAAGAGTGGGACACCAAGAAGACCGGGTCCAGGCCCAAGTCCTGTGACGTCGCCGGAATCAACATCTTCCCATCCGCC
GACCAGGAAAACACTACAGCCCTGATCCCAGCCACCCACAACACTGGAGGCTCCCTGCCCGACCTGACCAACATCCACTT
CCCCTCCCCGTTCCCGACC
ORF - retro_cjac_595 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.14 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | SQLQLQKSQYLQLGPSRGQYYGGSLPNVNQIGSGTMDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRERGR |
| ..LQLQKSQYLQLGPS..QYYGGSL.NVNQIGSGTM.LPFQTPFQSSGLDTS.TT.HHGLVDRVYRE.G. |
Retrocopy | ARLQLQKSQYLQLGPSCNQYYGGSLLNVNQIGSGTMHLPFQTPFQSSGLDTSWTTWHHGLVDRVYRECGW |
|
Parental | LGSPHRRPLSVDKHGRQADSCPYGTVYLSPPADTSWRRTNSDSALHQSTMTPTQPESFTSGSQDVHQKRV |
| LGSPHR.PLSVDK.GRQADSCPYGTVYL.PPADTSWRRTNSDSALHQSTMT.TQPES.T.GSQDV.QK.V |
Retrocopy | LGSPHRPPLSVDKRGRQADSCPYGTVYLRPPADTSWRRTNSDSALHQSTMTLTQPESLTNGSQDVNQKKV |
|
Parental | LLLTVPGMEETTSEADK-NLSKQAWDTKKTGSRPKSCEVPGINIFPSADQENTTALIPATHNTGGSLPDL |
| LLLTVPGMEETTSEADK.NLSK..WDTKKTGSRPKSC.V.GINIFPSADQENTTALIPATHNTGGSLPDL |
Retrocopy | LLLTVPGMEETTSEADK<NLSKKEWDTKKTGSRPKSCDVAGINIFPSADQENTTALIPATHNTGGSLPDL |
|
Parental | TNIHFPSPLPT |
| TNIHFPSP.PT |
Retrocopy | TNIHFPSPFPT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .02 RPM |
0 .95 RPM |
SRP051959_heart |
0 .07 RPM |
1 .16 RPM |
SRP051959_kidney |
0 .02 RPM |
1 .13 RPM |
SRP051959_liver |
0 .00 RPM |
0 .41 RPM |
SRP051959_lung |
0 .02 RPM |
1 .29 RPM |
SRP051959_lymph_node |
0 .00 RPM |
1 .44 RPM |
SRP051959_skeletal_muscle |
0 .04 RPM |
0 .87 RPM |
SRP051959_spleen |
0 .00 RPM |
1 .20 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_595 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_595 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_595 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.