>retro_cpor_1051
TCTACAGGAGAGGAAGCACTGGGCAGCAGAACCCCAGAGAGAAGACCAGAGCTCAAGAATAGAGGGGCATTTCTAAGATC
TGGATTTGGAGATGGTGGCTTCCAGATGTCTTCTGGAATTGGTGACGTTCCCCTTTAACATGCTTGCCACAGCAATTAAC
ATAAATGATAGGCAGCCTCCTCCAGCTGTCCCTGGGACACCCCAGTATGCAGATGAGCAGTTCCTGTCACGCCTCTTCCT
GTTGTGACCCTCCTGATCATGCTCTGGCTCCTGATTGCC
ORF - retro_cpor_1051 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
68.69 % |
Parental protein coverage: |
50.52 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | STGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIG-AFPFGIFATAFNINDGRPPPAVPG |
| STG.......TP.R....RPE..NRG.F...GFGDGGFQMS.GIG..FPF...ATA.NIND..PPPAVPG |
Retrocopy | STGEEALGSRTPER----RPELKNRGAFLRSGFGDGGFQMSSGIG>TFPFNMLATAININDRQPPPAVPG |
|
Parental | TPQYADEQFLSRLFLF-VALLIMFWLLIA |
| TPQYADEQFLSRLFL..V.LLIM.WLLIA |
Retrocopy | TPQYADEQFLSRLFLL<VTLLIMLWLLIA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
8 .63 RPM |
SRP017611_kidney |
0 .00 RPM |
10 .99 RPM |
SRP017611_liver |
0 .04 RPM |
9 .62 RPM |
SRP040447_lung |
0 .03 RPM |
9 .66 RPM |
SRP040447_skeletal_muscle |
0 .00 RPM |
12 .13 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_1051 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_1051 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.