RetrogeneDB ID: | retro_cpor_1082 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_45:1442165..1442462(+) | ||
Located in intron of: | ENSCPOG00000013806 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL51 | ||
Ensembl ID: | ENSCPOG00000008478 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76. % |
Parental protein coverage: | 78.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RGLCGLVTLACRNFSLGVPGLSRIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGDFEKHPKDLIRGPRWL |
R.LC..VTLACRNFS.GVPGLS.IRLT..PPKVVD.WN.KR..FGVYDNI.IL.D.EKH..DLI.GP..L | |
Retrocopy | RSLCSWVTLACRNFSVGVPGLSCIRLTQLPPKVVDSWN-KRVVFGVYDNIRILRDLEKHLEDLITGPI*L |
Parental | RGWKGNELQRCIRKKKMVGNRMFIDDLHNL |
.GWKGNELQ..I.KKKMVGNRMF.DDLHNL | |
Retrocopy | QGWKGNELQQWIQKKKMVGNRMFTDDLHNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 21 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .57 RPM |
SRP017611_liver | 0 .00 RPM | 21 .63 RPM |
SRP040447_lung | 0 .00 RPM | 9 .63 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 31 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014729 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018232 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008478 | 1 retrocopy |
retro_cpor_1082 ,
|
Loxodonta africana | ENSLAFG00000002106 | 2 retrocopies | |
Mus musculus | ENSMUSG00000030335 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000012566 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019165 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000936 | 2 retrocopies |