>retro_cpor_1198
GGTGTAAACACTGCCACCGTGGAAGTAGGAAAGGCTTGCCTCATGTTCTGGGACTTAGGACTGGAAGAGCTGCAGTCTTT
GTGGGACAAGTACCGTGCAGAGTGCCATGTCGTCTTCTGTGTCACGGACTCCACTGATGAAAGGAGACTGTCAGAATCCA
AGCAGGCATTCAAGAAGGTGGTTTGGAGTGAGTATCTTGACAACGCCCTATCCTGGTGCTGGCTAACAAACCGGATGTGG
AGAAGTGCCTCTTGATCCCTGACATCAAGACCGCATTTAGTGACTGCACCTGTAAGATCAGCACGCGAGACTGTCTGACC
CAGGCCTGCTCTGCCCACATAGGCAAAGGAATACAAGAG
ORF - retro_cpor_1198 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.05 % |
Parental protein coverage: |
60.2 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKVVSSESLDGV |
| G.N..TV.VGKA.LMFWDLG..EELQSLWDKY.AECH.V..V.DSTDE.RLSESKQAF.KVV.SE.LD.. |
Retrocopy | GVNTATVEVGKACLMFWDLG-LEELQSLWDKYRAECHVVFCVTDSTDERRLSESKQAFKKVVWSEYLDNA |
|
Parental | -PILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVRE |
| .PILVLANK.DVE.CL.IPDIKTAFSDCTCKI..RDCLTQACSA..GKG..E |
Retrocopy | <PILVLANKPDVEKCLLIPDIKTAFSDCTCKISTRDCLTQACSAHIGKGIQE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
20 .48 RPM |
SRP017611_kidney |
0 .00 RPM |
25 .44 RPM |
SRP017611_liver |
0 .00 RPM |
10 .97 RPM |
SRP040447_lung |
0 .03 RPM |
36 .55 RPM |
SRP040447_skeletal_muscle |
0 .00 RPM |
24 .35 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_1198 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_1198 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.