RetrogeneDB ID: | retro_cpor_1237 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_6:18426665..18427278(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STARD3NL | ||
Ensembl ID: | ENSCPOG00000004394 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.09 % |
Parental protein coverage: | 89.36 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | HSINATQLMARIESYEGRDKKGISDVRRTFCLFVTFDLLFVTLLWIIELNVNGGIENTLEKEVVQYDYYS |
H...A.....R.....G.........RRTFCL.VTFDL.FV.LL..IEL.V....ENTLEK.VV..DY.. | |
Retrocopy | HQPHAAHSQDRVLQEKGEERR----IRRTFCLLVTFDL*FVILLQVIELHVKRSTENTLEKQVVW*DY-C |
Parental | SYFDIFLLAVFRFKVLILAYAVCRLRHWWAIALTTAVTSAFLLAKVILSKLFSQGAFGYVLPIISFILAW |
SYF.IFLLAV.RFKV.ILA..V.RLRH.WA.AL.TAVT.AFLL.KV.LSKL.SQG.FG.VLPIISFILA. | |
Retrocopy | SYFNIFLLAVSRFKVRILAHSVRRLRHSWAKALMTAVTRAFLLGKVVLSKLSSQGMFG*VLPIISFILA* |
Parental | IETWFLDFKVLPQEAEE-ENRLLIVQDASERAALIPAGLSDGQFYSPPESEAGSDEQAEEKQDSEKALLE |
.ETWFLDFKVLP.EAEE.E...L.......R....PAGLSD.QF..PPE.EAGS.E.A..KQD.EKAL.E | |
Retrocopy | LETWFLDFKVLPKEAEE>ETDSLVLR-MRRRGLPFPAGLSDDQF*FPPETEAGSEEAAGGKQDGEKALSE |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .35 RPM | 32 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 48 .78 RPM |
SRP017611_liver | 0 .00 RPM | 7 .40 RPM |
SRP040447_lung | 0 .05 RPM | 54 .83 RPM |
SRP040447_skeletal_muscle | 0 .20 RPM | 7 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000038795 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008990 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012622 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004394 | 1 retrocopy |
retro_cpor_1237 ,
|
Dasypus novemcinctus | ENSDNOG00000017960 | 1 retrocopy | |
Equus caballus | ENSECAG00000005250 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000945 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023659 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014750 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004099 | 1 retrocopy |