RetrogeneDB ID: | retro_cpor_1267 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_61:1470804..1471199(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RCAN1 | ||
Ensembl ID: | ENSCPOG00000010683 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.61 % |
Parental protein coverage: | 67.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SSLIACVANSDIFSESETRAKFESLFRTYDKDITFQYFKSF-KRVRINFSNP-LSAADARLQLH-KTEFL |
S..IAC......F.......KFES..RTY.K..TF.YFKSF..RVRIN.SNP..SAADARL.L..KTEF. | |
Retrocopy | STAIACQLDLCMFADGLCWVKFESASRTYAKNVTFRYFKSF<QRVRINCSNP<ISAADARLRLQ<KTEFP |
Parental | GKEMKLYFAQTL-HIGSSHLAPPNPDKQFLISPPASPPVGWKQ-VEDATPVINYDLLYAISKLGPGE |
GKE.K.YFAQ.L.H.GSSHLAPPNPDKQFLISPP.SPP.G.KQ..EDATPVIN.DLLY..SKLGPGE | |
Retrocopy | GKEIKFYFAQSLLHTGSSHLAPPNPDKQFLISPPTSPPMGCKQ<EEDATPVINQDLLYTLSKLGPGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .08 RPM |
SRP017611_liver | 0 .00 RPM | 6 .53 RPM |
SRP040447_lung | 0 .00 RPM | 14 .02 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 50 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002838 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000010683 | 1 retrocopy |
retro_cpor_1267 ,
|
Tarsius syrichta | ENSTSYG00000006972 | 1 retrocopy |