RetrogeneDB ID: | retro_cpor_1355 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_71:2971521..2971916(-) | ||
Located in intron of: | ENSCPOG00000007744 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BIRC5 | ||
Ensembl ID: | ENSCPOG00000027390 | ||
Aliases: | None | ||
Description: | baculoviral IAP repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001186646] |
Percent Identity: | 63.16 % |
Parental protein coverage: | 92.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGAPSLPRAWQLYLKEHRVSTFKNWPFVNGCSCTPER-MAEAGFIHCPTENEPDL-AQCFFCFKELEGWE |
.G.P.L....QLYLKE...S.FKNWPF..G..CT..R.MAE.GF.H.P..N.PDL.AQ..FCF.ELEGW. | |
Retrocopy | LGPPLLSQI*QLYLKEYWISVFKNWPFFDGRTCTLKRVMAETGFLH*PAKNKPDL<AQLTFCFMELEGWS |
Parental | PDDNPIEEHKKHSSGCAFLSVKKQFEELTLSEFLKLDKERAKNKIAKETNSKQKEFEETAAKV |
....PIEEHKK.......LS.KKQF.ELTL.EFLKLDKE.A.NKIAKETN.KQKEFEE...KV | |
Retrocopy | N*GSPIEEHKKAFIWFCGLSAKKQFNELTLREFLKLDKEKAMNKIAKETNIKQKEFEESTKKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .88 RPM |
SRP017611_liver | 0 .00 RPM | 1 .00 RPM |
SRP040447_lung | 0 .00 RPM | 4 .24 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 1 .99 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000027390 | 1 retrocopy |
retro_cpor_1355 ,
|
Equus caballus | ENSECAG00000008466 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006281 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013767 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000001871 | 2 retrocopies |