>retro_cpor_1451
AATAACTAGCCTGCAAGAACTGGCACATAATTGAGCACAGATCCTCCTGCTAAGAAACCCCAAAGCCCTCCCATATCATG
CTGGGGAACACGGGGAAGAAGTCCTCTCACAAAATCCCTGCAGCCTGCTAAACCCCCAACCGTTCCTAATGATTGCATGT
CCAGTCCTGCAAGGCTCAGAAGTCAGCCTAGTCCAGGCAGGACAGCTTTTTAAATCAGAGAGCAAGGACATACAGTGGAA
GGAGTGGAGAAAGGGAAGTTGAGGGAACAGTGGGGTCAGTGGAACAGGCATCCCCCCTGCTGCACCCTCTCCCTCCCCAC
CCAGACCTGGACCAGGGCCCTCAGCTTGGCTCCTGGTTCCAATATGGCACCAGGACCAGGCAGATTTCTCCAAGCCACTC
TGCCATGTCCTCCAGAGCTTCTGGTGGGCACAGATGAATTCCCTCTGTGACTGCTCAGTTTTCTGCCAAGCTGCATGTTA
GTGGAGGTGCACTTTATTCTCAGAATTTAGTTTCTATTGTTACACCCCTCCTCCCATGCCTCTAGTGACTCCACACATAC
TTCACCCAGGCTTCATGGTCAGGGTGCAGGAAAACACTGTTGACAGCCCAGCTCCACCTCCACCAGATGTTGTTCCTGAA
TGTGATGACTGTTCACCTCCACCCCTGCCCCTCTCCCAGGAGACTATAAGATGAACAAGCCTGATTATTATTATTATAAT
CCCTATAATAATAATCCCTATGCAGATGGGGAGCCTGCCTGGGCCCCCAAGAATTATACTGAGAAAGTTGTTGCAATATA
TGATCATACAAAAGACAAGGCTCATGAGGTGTCATTTATGGAGGGTGCAATCACTGATGTTAGAAATAAGAACCACTATG
GTTGCCATGAAGCGATCGGCAGTCCAGTACTGGTCACTTCCTGGGAACTGCGTTGAGTCAGGCACGCACTATGCTGAT
ORF - retro_cpor_1451 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.66 % |
Parental protein coverage: |
66.53 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
8 |
Retrocopy - Parental Gene Alignment:
Parental | NNQPARTGTLSRTNPPTQKPPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTA- |
| NN.PARTGT...T.PP..KP.SPP.S..GT.GR....K.L.P.KPPTVPND.M.SPARL.SQ.SPGRTA. |
Retrocopy | NN*PARTGT*LSTDPPAKKPQSPPISCWGTRGRSPLTKSLQPAKPPTVPNDCMSSPARLRSQPSPGRTA< |
|
Parental | SLNQRPRTHSGSSG-GSGSRENSGSSSIGIPIAVPTPSPPTIAPA-APGSAPGS-QYGTMTRQISRHNST |
| .LNQR.RT.SG.SG...GS..NSG.S..GIP.A.P.PSPP...P..A...APGS.QYGT.TRQIS...S. |
Retrocopy | FLNQRARTYSGRSG<RKGS*GNSGVSGTGIPPAAPSPSPPRPGPG<ALSLAPGS<QYGTRTRQISPSHSA |
|
Parental | TSSTSSGGYRRTPSVTAQFSAQPHVNGGPLYSQNSISIAPP-PPPMPQLTPQIPLTGFVARVQENIADSP |
| .SS..SGG.R..PSVTAQFSA..HV.GG.LYSQN..SI..P.PPPMP..TP.I...GF..RVQEN..DSP |
Retrocopy | MSSRASGGHR*IPSVTAQFSAKLHVSGGALYSQNLVSIVTP<PPPMPLVTPHILHPGFMVRVQENTVDSP |
|
Parental | TPPPPPPPDDIPIFDD-SPPP-PPPPPVDYEDEEAAVVQYN----DPYADGDPAWAPKNYIEKVVAIYDY |
| .PPPP...D..P..DD.SPPP.P.P.P.DY.........YN.....PYADG.PAWAPKNY.EKVVAIYD. |
Retrocopy | APPPP---DVVPECDDCSPPP<PAPLPGDYKMNKPDYYYYNPYNNNPYADGEPAWAPKNYTEKVVAIYDH |
|
Parental | TKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNRV-TGLF-PGNYVESIMHYTD |
| TKDK..E.SFMEGAI..V..KN..G..E.....V.TG.F.PGN.VES..HY.D |
Retrocopy | TKDKAHEVSFMEGAITDVRNKNHYGCHEAIGSPV<TGHF<PGNCVESGTHYAD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
35 .49 RPM |
SRP017611_kidney |
0 .00 RPM |
30 .25 RPM |
SRP017611_liver |
0 .00 RPM |
23 .85 RPM |
SRP040447_lung |
0 .00 RPM |
47 .16 RPM |
SRP040447_skeletal_muscle |
0 .00 RPM |
8 .59 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_1451 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_1451 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
3 retrocopies.