RetrogeneDB ID: | retro_cpor_1498 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:35036487..35036958(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ABHD10 | ||
Ensembl ID: | ENSCPOG00000005650 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65. % |
Parental protein coverage: | 51.31 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | GQATASFG-HYHNLSAPTLKSQRV-PWRFPVCRQKTS-FSFLNRPDLPKLAYKRLNGKSPGVIFIPGYIS |
G.A..SFG.H........LK.Q...P...P.CRQKT..F.FLN.PDLPK.A.K....K.PGVIFIPGYIS | |
Retrocopy | GWAAFSFGPHHVQDAFLMLKPQGM>PG*LPACRQKTC<FNFLN*PDLPKMASK-IKKKNPGVIFIPGYIS |
Parental | NMNGTKALAIEEFCKSLGHAYIRFDYSGVGNSEGNLEECTVGKWRKDILSIIDDIAVGPQILVGSSLGGW |
.MNGTK.L...EFCKSL......FDYSGVG.SEG.LEEC.VGK.RKD.L.II.D.AVGPQIL.GSSL.GW | |
Retrocopy | KMNGTKELVTKEFCKSLELVCTGFDYSGVGKSEGDLEECMVGK*RKDLLFIIADMAVGPQILAGSSLSGW |
Parental | LMLHAAIARPEKVMALVGVA |
LML..AIA.PEK.MALVGVA | |
Retrocopy | LMLYVAIAQPEKAMALVGVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .48 RPM |
SRP017611_liver | 0 .00 RPM | 27 .64 RPM |
SRP040447_lung | 0 .00 RPM | 5 .75 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 5 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020230 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005650 | 1 retrocopy |
retro_cpor_1498 ,
|
Dipodomys ordii | ENSDORG00000014818 | 1 retrocopy | |
Felis catus | ENSFCAG00000029739 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009517 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016358 | 1 retrocopy |