>retro_cpor_1534
AAGGTTATCTTTGGCTCATTTTAATCTGCAATGACTGTAAATGGATAATTTTCTTTGCTCTATCAGGTGGCCCCAAAGGA
TACACATTTGGTCATTGGAAAGGTGTCCTTGATGCTTCATTTCTGCTGGACATGGGTGGGGCTGCTCATTACAGAAGGCC
ATAAGGGTCTTCAGTTTCTCTCAGATATGAGAACTGAGATTAATAAGAACAGAATTTGGATAGCCTTTGTAAAATGATCT
CAACTATGGCTGTGTCATATCTCTCAGGCATACAGAATCATAGTATCCTGCCTGCAGATACATCTTCAGTCAATGTAGTG
GTTATTTACTATGACAGTGATAATCCAAGTGATGTGAGATACATATAGTGCAACATTTAGAGTCATGGAAAATCTGGATA
ACAAACTCACAATGGCAAGCTGACATGGATGGATGAAATTTCATACACGATCCATTCCATGTTCTTACTTTTTCACACCA
GCATGAAGAGATTTTAAATTTTAAAACTTTTGTACAAAAGCTACCACATTTAAATACTCTGAAGACAATTTTTTGTTATG
TATCAATACAAGTATTTCTGTTGCTCCTTCTCTGAATCTGACCGTGCATTGGAGAACTGTACACCTAATGCCCCTCTGGC
TTGGCTGCCTCCAAATAGTTTTGAGACAGCCATGAGTGATAGAAGCTACAATATACACAATGATGTGTATGCTGTGGCCT
ATACCTTCCATGTGATGCTTTCTGAAGAAATACAAAGCCCTTAATTGAGAAATAGACAAGATGATGTTTCCCCCTCGCAA
GTAATATGTGTTCTTTTGGATGGCATGCAGTGTCACCAATGTGCCTCAGTCCAATTG
ORF - retro_cpor_1534 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.07 % |
Parental protein coverage: |
56.23 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | QVYYGLFDPTLSESGQYPLLHQVAQKDTFLALAMVSLMLHFHWTWVGLLTTEGHKGLQFLSDVRTEMDRN |
| .V..G.F.......G...LL.QVA.KDT.L....VSLMLHF.WTWVGLL.TEGHKGLQFLSD.RTE...N |
Retrocopy | KVIFGSF*SAMTVNG*FSLLYQVAPKDTHLVIGKVSLMLHFCWTWVGLLITEGHKGLQFLSDMRTEINKN |
|
Parental | RVCVAFVK-IVASSTVLYFSAMQKHDILTADTSSVNVVVIYYDTNSIHDVSY-HIVQNLMTWKIWVTNSQ |
| R...AFVK.......V.Y.S..Q.H.IL.ADTSSVNVVVIYYD.....DV.Y.HIVQ.L..WKIW.TNSQ |
Retrocopy | RIWIAFVK<MISTMAVSYLSGIQNHSILPADTSSVNVVVIYYDSDNPSDVRY<HIVQHLESWKIWITNSQ |
|
Parental | WQADLDGRNFILDSFHGVLVFSHHYEEISGFKNYVQE-ATPFKYPDDTYLF-MYWYKNFHCSFSESDCTL |
| WQAD.DG.NFI.D.FH.VL.FSH..EEI..FK..VQ..AT.FKY..D..L..MY.YK.F.CSFSESD..L |
Retrocopy | WQADMDG*NFIHDPFH-VLTFSHQHEEILNFKTFVQK<ATTFKYSEDNFLL<MYQYKYFCCSFSESDRAL |
|
Parental | ENCTPNASLAWLPPNHFDTAMNDRSYNIYNGVYAVAHALHAMLFAEEQGPSMRNRQMKMFSPWQQLNPFL |
| ENCTPNA.LAWLPPN.F.TAM.DRSYNI.N.VYAVA...H.ML..E.Q.P..RNRQ....SP.Q.....L |
Retrocopy | ENCTPNAPLAWLPPNSFETAMSDRSYNIHNDVYAVAYTFHVMLSEEIQSP*LRNRQDDV-SPSQVICVLL |
|
Parental | KNIQFSNSAGDQV |
| ...Q....A..Q. |
Retrocopy | DGMQCHQCASVQL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .00 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .00 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
SRP040447_lung |
0 .00 RPM |
0 .00 RPM |
SRP040447_skeletal_muscle |
0 .00 RPM |
0 .00 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_1534 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_1534 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.