RetrogeneDB ID: | retro_cpor_527 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_18:14102103..14102327(-) | ||
Located in intron of: | ENSCPOG00000000166 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX7A2 | ||
Ensembl ID: | ENSCPOG00000007404 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.37 % |
Parental protein coverage: | 81.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GWWAATC-KMLRNLLALRQIAQRTISTASRRHFENK-VPQKQKLFQEDDGIPVHLKGGVADALLYRATMF |
GWW..T..K.L.NLLALRQ..QRTISTAS.RHFENK.VPQK....QED.GIPVHLKGG.A..LL.RAT.. | |
Retrocopy | GWWDETG>KILWNLLALRQSSQRTISTASHRHFENK>VPQKN*RLQEDNGIPVHLKGGIAHTLL*RATTI |
Parental | LTVGGT |
LTVGGT | |
Retrocopy | LTVGGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 86 .58 RPM |
SRP017611_liver | 0 .00 RPM | 67 .90 RPM |
SRP040447_lung | 0 .00 RPM | 44 .06 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 70 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014453 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005096 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000010305 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007404 | 2 retrocopies |
retro_cpor_1300, retro_cpor_527 ,
|
Dipodomys ordii | ENSDORG00000015425 | 2 retrocopies | |
Homo sapiens | ENSG00000112695 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005865 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002313 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015747 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004949 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000016781 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010401 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000042903 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000004480 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002536 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000007294 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000007874 | 1 retrocopy |