RetrogeneDB ID: | retro_cpor_627 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_20:6665442..6665899(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BRCC3 | ||
Ensembl ID: | ENSCPOG00000001882 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.78 % |
Parental protein coverage: | 53.95 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | HLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGNEMRTVAEKVDTVRIVHIHSVIILRR |
HLES.AFL.CLNH.LSTEK.EVM.LC.G..N.DTRSDSKFA.TG....T.AEKV...RIVHI.SVI.... | |
Retrocopy | HLESTAFLICLNHTLSTEKKEVMRLCKGAWNNDTRSDSKFACTGTQIHTAAEKVHNTRIVHIYSVIMFSH |
Parental | SDKRKDRVEISPEQ-LSAASTEAETHRLAELTGRPMRVVGWYHSHPHITVWPSHVADVRTQAMYQMMDQG |
.DKRKD..EISP.Q...AASTEAE..RLA.L.G.P..V.G.Y.SHP.IT...SHV.DV..QAM.Q..DQG | |
Retrocopy | FDKRKD*IEISPKQ<AAAASTEAE--RLAKLIGHPKKVKGCYNSHPPITD*SSHV-DVHIQAMHQRIDQG |
Parental | -FVGLIFSCFIEDKNTKTG |
.F.G..FSCF.EDKNTK.G | |
Retrocopy | <FCGS-FSCFTEDKNTKNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .00 RPM |
SRP017611_liver | 0 .00 RPM | 8 .88 RPM |
SRP040447_lung | 0 .00 RPM | 9 .33 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 7 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007817 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000001882 | 2 retrocopies |
retro_cpor_388, retro_cpor_627 ,
|
Homo sapiens | ENSG00000185515 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027248 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016487 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031201 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014460 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005392 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019781 | 2 retrocopies |