>retro_cpor_78
ATGGAGACCCGCTACAACCTGAAGAGCCCGGCTGTTAAACGTTTAATGAAAGAAGCAGCAGAATTGAAAGATCCAACAGA
TCATTACCATGCGCAGCCTTTAGAGGATAATCTTTTTGAATGGCACTTCACAGTAAGAGGGCCCCCAGATTCTGATTTTG
ATGGAGGAGTTTATCATGGACGAATAGTACTGCCACCAGAGTATCCGATGAAACCACCAAGCATTATTCTCCTAACAGCT
AATGGACGATTTGAAGTCGGCAAGAAAATCTGTTTGAGCATCTCAGGACATCATCCTGAAACTTGGCAGCCTTCCTGGAG
TATAAGGACAGCGTTACTAGCCATCATTGGGTTTATGCCAACAAAAGGAGAGGGAGCCATAGGTTCTCTTGATTACACAC
CTGAAGAAAGAAGAGCACTTGCCAAAAAATCACAAGATTTCTGTTGTGAAGGCTGTGGCTCTGCCATGAAGGATGTCCTG
TTGCCTTTAAAATCAGGAAGCGACTCAAGCCAGGCTGACCAAGAAGCCAAGGAACTTGCAAGACAAATCAGTTTTAAGGC
AGAAGTCAATTCATCTGGAAAGAGTATTGCTGAGTCAGAGTTAAACCACTCTTTTTCACTAAATGACTTACAAGATAACA
TACCTACAACATTCCAGGATACCACGGCCAGCACCTCGTATGGAGTCCAGAATCCCTCAGCAGCACCCTTTGAACAACCT
ACCCAACCTGCAGCTAAGAATACCTCCATGAGCCCTCGACAGCGCCGGGCCCAACAGCAGAGTCAAAGAAGGTCATCCCT
GTCACCAGATGTAATACAGGGCCAGCAGCCAAGGGACAACCATACGGATCATGGTGGATCAGCTGTACTGATTGTCATCC
TGACTTTGGCATTGGCAGCTCTTATATTCCGACGAATATATATGGCCAATGAATACATATTTGACTTTGAGTTATAA
ORF - retro_cpor_78 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.48 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LESQCYLQALAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPM |
| .E....L...AVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPM |
Retrocopy | METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPM |
|
Parental | KPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRAL |
| KPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRAL |
Retrocopy | KPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRAL |
|
Parental | AKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELARQISFKAEVNSSGKSIAESELNHSFSLNDL |
| AKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELARQISFKAEVNSSGKSIAESELNHSFSLNDL |
Retrocopy | AKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELARQISFKAEVNSSGKSIAESELNHSFSLNDL |
|
Parental | QDNIPTTFQDTTASTSYGVQNPSAAPFEQPTQPAAKNTSMSPRQRRAQQQSQRRSSLSPDVIQGQQPRDN |
| QDNIPTTFQDTTASTSYGVQNPSAAPFEQPTQPAAKNTSMSPRQRRAQQQSQRRSSLSPDVIQGQQPRDN |
Retrocopy | QDNIPTTFQDTTASTSYGVQNPSAAPFEQPTQPAAKNTSMSPRQRRAQQQSQRRSSLSPDVIQGQQPRDN |
|
Parental | HTDHGGSAVLIVILTLALAALIFRRIYMANEYIFDFEL |
| HTDHGGSAVLIVILTLALAALIFRRIYMANEYIFDFEL |
Retrocopy | HTDHGGSAVLIVILTLALAALIFRRIYMANEYIFDFEL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
1 .50 RPM |
3 .45 RPM |
SRP017611_kidney |
2 .41 RPM |
4 .19 RPM |
SRP017611_liver |
2 .13 RPM |
4 .96 RPM |
SRP040447_lung |
2 .17 RPM |
13 .24 RPM |
SRP040447_skeletal_muscle |
1 .30 RPM |
7 .51 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_78 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_78 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.