>retro_cpor_802
CAGAAAATTCTCCTTGGCAGCCTCCTGATTCTGGCCACCTTCATGACTGCATGCAATGCTGAATGCTATGTCATACCTTT
GGAGAAAGTTCAAGATGGTTCACATACTGAATGCAAGGAAGTTTATGGAGTCACACACTCTTTGAAATCACATTGCAGGA
CTTTCCACTGTGATGATTGTTTGTGTGAAGAAAATGAAATAAGCTGCTGCAAATTAACTCCTATACCTGTGGACTATGAC
AGAACTATGTGCCATGTCACCTTCCACAGGAACAATGCACCTATTCTGTTATGGAGTACAGGGATCCCCAAAAGGCCTAT
GCTGTTCATACCTGGGTATTA
ORF - retro_cpor_802 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.26 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | QRILLGSLLVLATFMTICNAECYVIPLEKVPDGSRTECKDLYGVTHPLKSSWRTFHCDDCYCEENEISCC |
| Q.ILLGSLL.LATFMT.CNAECYVIPLEKV.DGS.TECK..YGVTH.LKS..RTFHCDDC.CEENEISCC |
Retrocopy | QKILLGSLLILATFMTACNAECYVIPLEKVQDGSHTECKEVYGVTHSLKSHCRTFHCDDCLCEENEISCC |
|
Parental | KLAPVPVDYDKILCRVTFHRNN-CSYSVTEYRDPGKACVVRKWVL |
| KL.P.PVDYD...C.VTFHRNN.C.YSV.EYRDP.KA..V..WVL |
Retrocopy | KLTPIPVDYDRTMCHVTFHRNN<CTYSVMEYRDPQKAYAVHTWVL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
8 .57 RPM |
SRP017611_kidney |
0 .00 RPM |
16 .02 RPM |
SRP017611_liver |
0 .04 RPM |
4 .18 RPM |
SRP040447_lung |
0 .03 RPM |
6 .89 RPM |
SRP040447_skeletal_muscle |
0 .01 RPM |
8 .06 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_802 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_802 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.