RetrogeneDB ID: | retro_crei_3 | ||
Retrocopy location | Organism: | Chlamydomonas reinhardtii | |
| Coordinates: | BK000554:169743..170145(-) | ||
| Located in intron of: | DAA01471 | ||
Retrocopy information | Ensembl ID: | DAA00960 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | CHLREDRAFT_130212 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_crei_3
ATGCCTACAATTCAACAATTAATTCGTTCTGCTCGAAAAAAAATCACAAAGAAAACAAAATCACCTGCTCTTAAATCTTG
TCCACAACGTCGTGGTATTTGTCTTCGTGTTTATACAGTTACACCAAAAAAACCAAACTCTGCACTTCGTAAAGTTGCTA
GGGTTCGTTTAACTACAGGATTTGAAGTAACAGCTTATATTCCAGGTGTTGGCCACAATTTACAAGAACACGCAGTAGTA
TTAGTACGTGGTGGTCGAGTTAAAGATTTACCTGGTGTACGTTATCACATTGTACGTGGTAGTTTAGATACAGCTGGTGT
TAAAAACCGTGTTCAAAGTCGTTCAAAATATGGTGTTAAAATGGGGTCAAAAACAGCTGCAAAAACAGCAGGTAAAAAAT
AA
ORF - retro_crei_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.35 % |
| Parental protein coverage: | 91.97 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MATVGQLLGGARKVAKTRKCRIRQLDGSPFKKGICLRVYTTSPKKPNSANRKLAKVQLSNGLKALAYIPG |
| M.T..QL...ARK...T.K.....L...P...GICLRVYT..PKKPNSA.RK.A.V.L..G....AYIPG | |
| Retrocopy | MPTIQQLIRSARKKI-TKKTKSPALKSCPQRRGICLRVYTVTPKKPNSALRKVARVRLTTGFEVTAYIPG |
| Parental | EGHNLQEHSMVLVSGNGVRDLPGVKLRIVRGRYDCAGVKDRKKSRSRYGTKKPKAT |
| .GHNLQEH..VLV.G..V.DLPGV...IVRG..D.AGVK.R..SRS.YG.K....T | |
| Retrocopy | VGHNLQEHAVVLVRGGRVKDLPGVRYHIVRGSLDTAGVKNRVQSRSKYGVKMGSKT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Chlamydomonas reinhardtii was not studied using RNA-Seq expression data.
Chlamydomonas reinhardtii was not studied using ChIP-Seq data.
Chlamydomonas reinhardtii was not studied using EST data.
Chlamydomonas reinhardtii was not studied using FANTOM5 data.
retro_crei_3 was not experimentally validated.
Retrocopy orthology:
Chlamydomonas reinhardtii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Chlamydomonas reinhardtii | CHLREDRAFT_130212 | 1 retrocopy |
retro_crei_3 ,
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