RetrogeneDB ID:

retro_crei_8

Retrocopy
location
Organism:Chlamydomonas reinhardtii
Coordinates:DS496141:1075460..1075691(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:CHLREDRAFT_172427
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_crei_8
GTGGCGTTCCGCCGGCACGGGCCGCGGCGGCTGTCGGTCAGGTGTGTGATGGGTCTGCGCAAGGCGCTGGACAGCTACCT
CAGCGGCGTGCAGGCAGCGCAGTGGGCGGCGGCGCGGGACCGCAAGGAGACTGTGGGCGCAGCCTGCAGGGCAGACGAGC
AGGTGTGTTGGAGGCCGCGGCCCCTTCGTACGTTTGGCCGCCTTAGGAAGGCTGCGGGAGCATTGATGTAC

ORF - retro_crei_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 55.84 %
Parental protein coverage: 66.96 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVAFRRHGPQRQWTKYLTGLRQSLDTYLTGAQAAQWAAARDRKEAVGAAFKADEQ--YRDRRPLTSDQIDY
VAFRRHGP.R.......GLR..LD.YL.G.QAAQWAAARDRKE.VGAA..ADEQ...R.R...T......
RetrocopyVAFRRHGPRRLSVRCVMGLRKALDSYLSGVQAAQWAAARDRKETVGAACRADEQVCWRPRPLRTFGRLRK
ParentalASGDVVH
A.G....
RetrocopyAAGALMY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Chlamydomonas reinhardtii was not studied using RNA-Seq expression data.
Chlamydomonas reinhardtii was not studied using ChIP-Seq data.
Chlamydomonas reinhardtii was not studied using EST data.
Chlamydomonas reinhardtii was not studied using FANTOM5 data.
retro_crei_8 was not experimentally validated.

Retrocopy orthology:
Chlamydomonas reinhardtii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Chlamydomonas reinhardtii CHLREDRAFT_172427 1 retrocopy
retro_crei_8 ,



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