>retro_csav_12
AAGCATAAAATGGCTGGCCCTTTAAACAACATGGCTGATAGGGAATTTAATCATTACGAGTTAAACAAGACTGATTGGGA
GGTGCCATCTAAATATGAAGATTTGGTTCCCATCGGTTGCGGGGCTTATGGTTCGGTGTGTTCGACTCTTAACTCCCAAC
TAAAAATGCGAATGGCGGTGAAGAAATTGGCACGGCCGTTCCAGTCGGTCACCCATGCGAAGCGCACGTACAGAGAACTG
AGATTGCTCAAGCACATGCACCATGAAAACGTGATTGGATTGCTCGACGTCTTCACCCCTGCTTCCTCGATTGAAAACTT
TACCGACATGTACCTAGTCACTCATCTTATGGGTGCGGATTTGAACCAGATCATTAAATCGCAGAAACTCACTGACGACC
ACGTGCAGTTTTTGATTTACCAGATCCTAAGAGGCCTAAAGTACATTCACTCTGCCGGCATTATTCACAGAGATTTAAAG
CCAAGTAATATCGCTGTCAACGAAGATTGCGAGTTAAAAATCCTCGATTTCGGCCTTGCGCGCTTAACAGATGATCAAAT
GACCGGTTACGTGGCGACCAGATGGTACAGAGCACCGGAGATCATGCTAAACTGGATGCATTATAACCAGACTGTTGATA
TCTGGTCTGTGGGTTGTATCATGGCGGAACTTCTAACAGGACAGACTCTTTTCCCAGGCTCCGACCACATTGATCAGTTA
AAATCCATCATGACCTTATGCGGAACGCCGAGAGATGACTTGCTTGAGAAAATCATCTCACAGTCAGCGCGGAACTTCAT
TAAAAACCTCCCCATCATTCCAAAGAAGGAATTCATCAACGTATTTGTTGGCGCGAATCCGAAAGCAGTCGATTTACTAG
AGCGCATGCTCGTGCTCGACACTGACTGCCGGTTAACAGCAAGCGAGGCGTTGCAACATCCATATTTGGAGAAATTCCAC
GACCCAGAAGATGAACCTACAGCCCCTCTGTACGACAAGACGTACGAAGACGCCGAGATTTCGATAGACGAGTGGAAGCA
ACTGGCTTACGACGAAATAGTCAACTTTAAATTTTCACCGGACCTTATAACAGATTAC
ORF - retro_csav_12 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
50.95 % |
Parental protein coverage: |
71.43 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ANAEFYTLQVSDSVFTVLKRYQSLKPIGSGAQGMVCAAHDTVLGQNVAIKKLSRPFQNPTHAKRAYRELV |
| A..EF...........V...Y..L.PIG.GA.G.VC......L....A.KKL.RPFQ..THAKR.YREL. |
Retrocopy | ADREFNHYELNKTDWEVPSKYEDLVPIGCGAYGSVCSTLNSQLKMRMAVKKLARPFQSVTHAKRTYRELR |
|
Parental | LMRAVNHKNIIGLLNVFSPQSTYEEFSHVYLVMELMDASLCQVIQ-MDLDHERLSYLLYQLLCGIKHLHS |
| L.....H.N.IGLL.VF.P.S..E.F...YLV..LM.A.L.Q.I....L.......L.YQ.L.G.K..HS |
Retrocopy | LLKHMHHENVIGLLDVFTPASSIENFTDMYLVTHLMGADLNQIIKSQKLTDDHVQFLIYQILRGLKYIHS |
|
Parental | AGIIHRDLKPSNIVVRSDCTLKILDFGLARTAGGSFMMTPYVVTRYYRAPEVILG-MGYQEVVDIWSVGC |
| AGIIHRDLKPSNI.V..DC.LKILDFGLAR.......MT.YV.TR.YRAPE..L..M.Y...VDIWSVGC |
Retrocopy | AGIIHRDLKPSNIAVNEDCELKILDFGLARLTDD--QMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC |
|
Parental | IFGEMIRGQVLFPGTDHIDQWNKITEQLGTPSQDFINK-LQPTVRNYVLNRPM |
| I..E...GQ.LFPG.DHIDQ...I....GTP..D...K......RN...N.P. |
Retrocopy | IMAELLTGQTLFPGSDHIDQLKSIMTLCGTPRDDLLEKIISQSARNFIKNLPI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ciona savignyi was not studied using RNA-Seq expression data.
Ciona savignyi was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_csav_12 retrocopy.
Ciona savignyi was not studied using FANTOM5 data.
retro_csav_12 was not experimentally validated.
Retrocopy orthology:
Ciona savignyi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.