RetrogeneDB ID:

retro_dmel_14

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:3R:9978686..9979481(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0038209
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Nmda1
Ensembl ID:FBgn0013305
Aliases:None
Description:N-methyl-D-aspartate receptor-associated protein [Source:FlyBase gene name;Acc:FBgn0013305]


Retrocopy-Parental alignment summary:






>retro_dmel_14
ATGCTGGATATTTTACAAGAACCAGTACATCAGTATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATA
TACAGCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATTCTGCAGCGCCAGCATCCGGCGAGGAT
TCATCCGGAAGGTGTACCTCATCCTGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCTGATAAA
CGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGTGGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCT
GGGCTGCAATGAGGATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACGATAGCCGAGTCCTTTC
TGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAATGGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGA
CTCACCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTCCTGGTGAGCTGCCTGATAATACTGCT
CTTCTTTGGAATTGTGACCATCTTCGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGCTCTTCT
CCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAGCATAGGTACTCCATTAGTCCCGAGGAGTACATATTC
GCTGCCCTAAATATTTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAGGATCCGATTAG

ORF - retro_dmel_14 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 55.56 %
Parental protein coverage: 74.76 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalYGAYDDPESQPKNFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWVALGV
YG.........K...F...SIRRGFIRKVYLIL..QLI.......................W.F.VA...
RetrocopyYGSEIGQDDPDKGLGFCSASIRRGFIRKVYLILLAQLITSLVVIVSLTADKRVRLMVAESTWIFVVAILI
ParentalMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLMAVGITAAVCLALTIFALQTK
.........C.E..RRQTP.NFIFL..FT.A.SFL.GV.A..YAP.E..MAV.ITA.VCL.LT.FALQT.
RetrocopyVVFSLVALGCNEDLRRQTPANFIFLSAFTIAESFLLGVAACRYAPMEIFMAVLITASVCLGLTLFALQTR
ParentalYDFTMMGGILIACMVVFLIFGIVAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYI
YDFT.MGG.L..C....L.FGIV.IFV.G...T..YAS..ALLFSVYL.YDTQLMMGG.H.YSISPEEYI
RetrocopyYDFTVMGGLLVSCLIILLFFGIVTIFVGGHMVTTIYASLSALLFSVYLVYDTQLMMGGKHRYSISPEEYI
ParentalFAALNLYLDIINIFMYILTIIGAS
FAALN.Y.D..NIF..IL..IG.S
RetrocopyFAALNIYMDVMNIFLDILQLIGGS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_14 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_14 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Drosophila melanogaster FBgn0013305 1 retrocopy
retro_dmel_14 ,



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