>retro_dmel_14
ATGCTGGATATTTTACAAGAACCAGTACATCAGTATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATA
TACAGCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATTCTGCAGCGCCAGCATCCGGCGAGGAT
TCATCCGGAAGGTGTACCTCATCCTGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCTGATAAA
CGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGTGGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCT
GGGCTGCAATGAGGATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACGATAGCCGAGTCCTTTC
TGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAATGGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGA
CTCACCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTCCTGGTGAGCTGCCTGATAATACTGCT
CTTCTTTGGAATTGTGACCATCTTCGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGCTCTTCT
CCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAGCATAGGTACTCCATTAGTCCCGAGGAGTACATATTC
GCTGCCCTAAATATTTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAGGATCCGATTAG
ORF - retro_dmel_14 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
55.56 % |
Parental protein coverage: |
74.76 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | YGAYDDPESQPKNFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWVALGV |
| YG.........K...F...SIRRGFIRKVYLIL..QLI.......................W.F.VA... |
Retrocopy | YGSEIGQDDPDKGLGFCSASIRRGFIRKVYLILLAQLITSLVVIVSLTADKRVRLMVAESTWIFVVAILI |
|
Parental | MLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLMAVGITAAVCLALTIFALQTK |
| .........C.E..RRQTP.NFIFL..FT.A.SFL.GV.A..YAP.E..MAV.ITA.VCL.LT.FALQT. |
Retrocopy | VVFSLVALGCNEDLRRQTPANFIFLSAFTIAESFLLGVAACRYAPMEIFMAVLITASVCLGLTLFALQTR |
|
Parental | YDFTMMGGILIACMVVFLIFGIVAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYI |
| YDFT.MGG.L..C....L.FGIV.IFV.G...T..YAS..ALLFSVYL.YDTQLMMGG.H.YSISPEEYI |
Retrocopy | YDFTVMGGLLVSCLIILLFFGIVTIFVGGHMVTTIYASLSALLFSVYLVYDTQLMMGGKHRYSISPEEYI |
|
Parental | FAALNLYLDIINIFMYILTIIGAS |
| FAALN.Y.D..NIF..IL..IG.S |
Retrocopy | FAALNIYMDVMNIFLDILQLIGGS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_14 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_14 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.