RetrogeneDB ID: retro_dmel_15

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2L:2768644..2769565(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0019830
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG3476
• Ensembl ID: FBgn0031881
• Aliases: None
• Description: None

Sequence

>retro_dmel_15
ATGACCACCACGGAGAACGTGTCCACGGAGCGCAAAGCGAATCCAGTGAAGTCCTTCCTGACCGGCGGATTCGGTGGGAT
CTGCAATGTGCTCTCTGGCCATCCGCTGGACACCATCAAGGTGCGCCTGCAGACCATGCCGCGTCCGGCGCCGGGTGAGC
AGCCCCTGTACCGCGGCACCTTCGACTGTGCGGCCAAGACGATCAAAAATGAGGGCGTCCGCGGTCTGTACAAGGGCATG
TCCGCACCGTTGACGGGCGTTGCTCCGATCTTTGCGATGTGCTTCGCCGGCTATGCGCTGGGCAAGCGGCTGCAGCAGCG
CGGCGAGGACGCCAAGCTGACCTACCCGCAAATCTTCGTGGCCGGCTCCTTCTCCGGCCTGTTCTCCACCCTGATAATGG
CACCCGGCGAGCGCATCAAGGTGCTCCTGCAGACGCAGCAGGGTCAGGGTGGCGAGCGCAAGTACAACGGCATGATCGAC
TGCGCCGGCAAGCTATACAAGGAGGGTGGACTTCGCAGCGTTTTCAAGGGCAGCTGCGCCACAATGCTCAGGGATTTGCC
CGCCAACGGGCTGTACTTCCTGGTCTACGAGGCGCTGCAGGATGTGGCCAAGTCGAAGTCAGAGACGGGACAAATCAGTA
CTGCCTCAACGATTTTCGCAGGTGGAGTGGCGGGCATGGCCTACTGGATTCTGGGCATGCCAGCCGACGTGTTAAAGAGC
CGCCTACAATCGGCTCCCGAAGGCACCTACAAGCACGGCATACGCAGTGTCTTCAAGGATCTGATTGTCAAGGATGGACC
TCTGGCCTTGTACCGCGGCGTGACGCCCATCATGCTCCGAGCCTTCCCAGCCAACGCTGCCTGCTTCTTCGGCATTGAGT
TGGCTAACAAATTCTTTAACATCGTAGCTCCAAATTTCTAG

Alignment

ORF - retro_dmel_15 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.76 %
• Parental protein coverage: 96.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ISTEKKSNPVKSFIAGGVGGMCNVLVGHPLDTIKVRLQTMPTPPPGQPPRYKGVIDCAARTFRYEGFRGF
          .STE.K.NPVKSF..GG.GG.CNVL.GHPLDTIKVRLQTMP.P.PG..P.Y.G..DCAA.T...EG.RG.
Retrocopy VSTERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGL

Parental  YRGISAPLVGVTPIYAVDFAVYAAGKRLFQTDDHIRLTYPQIFAAGALAGVCSALVTVPTDRIKVLLQTQ
          Y.G.SAPL.GV.PI.A..FA.YA.GKRL.Q......LTYPQIF.AG...G..S.L...P..RIKVLLQTQ
Retrocopy YKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQ

Parental  TVSNGPLLYNGTIDTAAKLYRQGGIRSLFKGTCACILRDSP-TGFYFVTYEFLQELARKKSANGKISTTS
          ....G...YNG.ID.A.KLY..GG.RS.FKG.CA..LRD.P..G.YF..YE.LQ..A..KS..G.IST.S
Retrocopy QGQGGERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQDVAKSKSETGQISTAS

Parental  TILSGGTAGIVFWTLAVPFDVLKSRLQSAPEGTYKHGIRSVFRNLMATEGPKALFRGILPILLRAFPSTA
          TI..GG.AG...W.L..P.DVLKSRLQSAPEGTYKHGIRSVF..L....GP.AL.RG..PI.LRAFP..A
Retrocopy TIFAGGVAGMAYWILGMPADVLKSRLQSAPEGTYKHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANA

Parental  AVFFGVELTN
          A.FFG.EL.N
Retrocopy ACFFGIELAN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_15 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_15 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000003285	1 retrocopy	retro_cjac_2338,
Homo sapiens	ENSG00000178537	1 retrocopy	retro_hsap_3469,
Gorilla gorilla	ENSGGOG00000028046	1 retrocopy	retro_ggor_2341,
Macaca mulatta	ENSMMUG00000015418	1 retrocopy	retro_mmul_1764,
Monodelphis domestica	ENSMODG00000013383	3 retrocopies	retro_mdom_1584, retro_mdom_229, retro_mdom_266,
Nomascus leucogenys	ENSNLEG00000006700	1 retrocopy	retro_nleu_342,
Pongo abelii	ENSPPYG00000013892	1 retrocopy	retro_pabe_2865,
Pan troglodytes	ENSPTRG00000014900	1 retrocopy	retro_ptro_2352,
Drosophila melanogaster	FBgn0031881	1 retrocopy	retro_dmel_15 ,