RetrogeneDB ID:

retro_dmel_16

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:3R:12964828..12966760(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0038486
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CG1041
Ensembl ID:FBgn0037440
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_dmel_16
ATGAAGTTCCGTGACAATGGAAAGGTCCTTTGGAATTTCGCAAGGATATCGGCTCTGCAACAGACTCGATATACGTTCGG
CAAAAAAATGCCAATTGCCAGCTATAGCACTGCCAAGGATAAGCCTAAATCCGATCAGCCAAACCTTCTAAAGTATCATG
TCTTACCTCTTGAAGAAATCCTCAACCGCTTCATGATTACCGTACAACCATTGCTGACACCCGAGGAGTTCAAAAAGCAA
GAGAAGATTACTAACGAATTCCAGAGGAAGGAGGGCGCTAAGCTACAAAAGCTCCTCGAAGAAACTGGTGAACAGGAGAA
GAACTGGTTAGCCCATCGCTGGCTGAAGGTTGCCTACTTACAGTTTCGGTCGCCAGTGACTTGCTTCTCCAGTCCCGGCA
TGACCTTTCCCAAACAGAAATTTGAAAGTGTCCACGAATTTGTGGACTACACGTCTAGGGTTATCTTCGGTTTGGGTGAG
TTCAATGACTTGGTGCACGCCAAAAAGATTCCGATTGTGAAAATGGGCAAGAACGAGCTGGACAACAGTCAGTTTGGAAA
GGTTTTCGGCACATGCCGGATACCGAGAAGGTTTACCGACGATATCGTCTACAATCCGTGCTCTGATTATGTGGTGGTTA
TCTACCGGAATCACTTTTATCAACTGAAAATATACGACAAGGAAGGAAAGCTTATAATTGCACCATGTCTGGCTGTTCAA
CTGGAGGAAATAATGGCAAAGGAAAAGGAACCGGGAGTTCCTTATGGAATCTTGACCACCGATTCGCGGGACAACTGGGC
CGAGGCATACGAACACTTGTCAAATACGCCCCGTAATAGAGTTGCCCTGAAAACCATTCAGAATGCTATGTTCACAGTGT
CCCTCGACGAGTGTACCAGTCCAAAAGAAGGTCGAGATGCCGAAGAATTGATCCTTACGCTGATCCATGGAAAGGGCAGC
AAGTGCAACAGTGCCAACCGCTGGATGGATAAGACAATTCAATTGGTGGTAAACCCAAATGGACACGTTGGATTCACCTA
TGAGCACTCACCAGCCGAGGGCCAACCGATCGCAATGATGATGGACTATGTAGTGAAGAAGATGAAGGATGACCCTAGTT
ATGGGGAATGCGGATCGGAAAACTTTATTCCAGCGAAGAAAATAAAGTTCTGTGATGTAAGCAAATGCGTGGAGCAATGG
TTGATAATCGCGCAAAAAAACGTGGACAAACTTGTCCAGGACCTGCAAATGAAGGTTCTTAAGTTCGATTGCTACGGCAA
GGATTTCATCAAGAAACAGCGACTTGGTCCAGATAGCTTTGTTCAGATGGCATTGCAGTTGGCATTCTTTAAATTGCACT
ATGAGCCAGCTGCTCAATATGAATCGGCGCATTTGCGCATCTTCGATGGCGGCCGAACCGAAACCATCCGTTCGTGCTCC
AATGAATCCCTGGCTTTTTGCCACGCCATGGATGATGTGAGTGCATCAGCTCAGGAGCGGGCTAGTAAGATTCGCGAGGC
AGTGATGTGCCATCAGATGTATGCGAAGCTGGCGCTTCTGGGAAAGGGTGTCGATCGTCACCTCTTTGGACTTAAACTAA
TGGCGGTGGAGAACTGCCTACCTGTTCCGGAGTTCTTCTCTTCGCCAGGATATGTAAAGTCCACGCACTTTCGAATGTCC
ACTTCGCAGGTGGCCACCAAATATGATGCCTTCATGGGATATGGACCTTCTGTAGAAGATGGATATGCCTGTTGCTACAA
TCCCCGTGAACATGACATCATTTTGGCCATATCCGCATGGCGACATTGTCAGGCAACTGATCACCAAAAGATCGCCAAGG
CGCTTGCGCAGTCCTTTGCTGAAATGAAGGATGTACTTGAAACATGTCCAGCTTCAAAAGACAAGCCGCCAGAGCTTAAG
TGCAAGTATTGA

ORF - retro_dmel_16 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.64 %
Parental protein coverage: 95.32 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMKFRGNGKLLWNLTKNSLAQQSPNGIAKKVLPASSYSTVQKTIPLEQPNLLKYHVLPLEETLNRFMTTVE
MKFR.NGK.LWN....S..QQ......KK..P..SYST........QPNLLKYHVLPLEE.LNRFM.TV.
RetrocopyMKFRDNGKVLWNFARISALQQTRYTFGKK-MPIASYSTAKDKPKSDQPNLLKYHVLPLEEILNRFMITVQ
ParentalPLLTPEEFQRQKGITSEFLKKQGRELQLLLEETGSKEKNWLAHRWLKAAYLTYRDPVTVFVSPGMTFPKQ
PLLTPEEF..Q..IT.EF..K.G..LQ.LLEETG..EKNWLAHRWLK.AYL..R.PVT.F.SPGMTFPKQ
RetrocopyPLLTPEEFKKQEKITNEFQRKEGAKLQKLLEETGEQEKNWLAHRWLKVAYLQFRSPVTCFSSPGMTFPKQ
ParentalNFRDSRAFVDYTARVIYGLGEFNDMVHANKIPIVKMGKNELDNSQFGKVFGTCRIPRRGTDEIVYNPDSD
.F.....FVDYT.RVI.GLGEFND.VHA.KIPIVKMGKNELDNSQFGKVFGTCRIPRR.TD.IVYNP.SD
RetrocopyKFESVHEFVDYTSRVIFGLGEFNDLVHAKKIPIVKMGKNELDNSQFGKVFGTCRIPRRFTDDIVYNPCSD
ParentalYVVVIYKNHFYQLKIYSKEGKLIAAPCLAAQLENIVLKETQVGVPYGILTTDSRDNWAEAYEYLVETPGN
YVVVIY.NHFYQLKIY.KEGKLI.APCLA.QLE.I..KE...GVPYGILTTDSRDNWAEAYE.L..TP.N
RetrocopyYVVVIYRNHFYQLKIYDKEGKLIIAPCLAVQLEEIMAKEKEPGVPYGILTTDSRDNWAEAYEHLSNTPRN
ParentalRDALKTIQGALFTVSLDEGTILKEGEETDELILSLIHGSGSKINSGNRWMDKTIQLVVNPNGNVGFTYEH
R.ALKTIQ.A.FTVSLDE.T..KEG....ELIL.LIHG.GSK.NS.NRWMDKTIQLVVNPNG.VGFTYEH
RetrocopyRVALKTIQNAMFTVSLDECTSPKEGRDAEELILTLIHGKGSKCNSANRWMDKTIQLVVNPNGHVGFTYEH
ParentalSPAEGQPIAMMMDYVVQKMKEDPSFGQSGSQDFAPAQKIQFSSSNKSLEKSLNVAQENVDKLADALQMKV
SPAEGQPIAMMMDYVV.KMK.DPS.G..GS..F.PA.KI.F....K..E..L..AQ.NVDKL...LQMKV
RetrocopySPAEGQPIAMMMDYVVKKMKDDPSYGECGSENFIPAKKIKFCDVSKCVEQWLIIAQKNVDKLVQDLQMKV
ParentalLKFNGFGKDFIKKQRLGPDSFVQMALQLAFYKMHSEPPAQYESAHLRIFDGGRTETIRSCSNESLAFSRA
LKF...GKDFIKKQRLGPDSFVQMALQLAF.K.H.EP.AQYESAHLRIFDGGRTETIRSCSNESLAF..A
RetrocopyLKFDCYGKDFIKKQRLGPDSFVQMALQLAFFKLHYEPAAQYESAHLRIFDGGRTETIRSCSNESLAFCHA
ParentalMQDPNVTDQERAAKLREAVVSHQTYAKLALQGKGVDRHLLGLKLMALEHSKPIPEFFKSPGFVKSSHFRM
M.D.....QERA.K.REAV..HQ.YAKLAL.GKGVDRHL.GLKLMA.E...P.PEFF.SPG.VKS.HFRM
RetrocopyMDDVSASAQERASKIREAVMCHQMYAKLALLGKGVDRHLFGLKLMAVENCLPVPEFFSSPGYVKSTHFRM
ParentalSTSQVATKYDAFMGYGPATDDGYACCYNPRDNDIILAISAWRHCPITDHLKFVKTLEQSFFEMKNVLEKN
STSQVATKYDAFMGYGP...DGYACCYNPR..DIILAISAWRHC..TDH.K..K.L.QSF.EMK.VLE..
RetrocopySTSQVATKYDAFMGYGPSVEDGYACCYNPREHDIILAISAWRHCQATDHQKIAKALAQSFAEMKDVLETC
ParentalP
P
RetrocopyP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
3 EST(s) were mapped to retro_dmel_16 retrocopy
EST ID Start End Identity Match Mis-match Score
AI946591 12965117 12965518 100 401 0 401
BF486498 12965100 12965631 100 531 0 531
BF495751 12965100 12965705 100 605 0 605
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_16 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Myotis lucifugus ENSMLUG000000112871 retrocopy
Drosophila melanogaster FBgn0037440 1 retrocopy
retro_dmel_16 ,



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