RetrogeneDB ID: retro_dmel_20

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2R:11567112..11567487(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0262512
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: Vha14-2
• Ensembl ID: FBgn0037402
• Aliases: None
• Description: Vacuolar H[+] ATPase subunit 14-2 [Source:FlyBase gene name;Acc:FBgn0037402]

Sequence

>retro_dmel_20
ATGGCTCTGCACTCGGCAATCAAGGGAAAACTGATCAGCGTTATCGGCGACGAGGACACCTGTGTGGGCTTTCTGCTCGG
CGGAGTGGGCGAGATCAACAAGAATCGCCATCCCAACTTTATGGTGGTCGACAAAAATACGGCCGTCAGCGAACTGGAGG
ACTGTTTCAAGCGTTTCCTTAAGCGGGACGATATCGACATCATTCTAATCAACCAGAACTGCGCCGAGCTTATTCGTCAT
GTGATCGATGCCCATACGTCGCCCGTGCCCGCTGTTTTGGAGATTCCCTCCAAGGACCATCCGTACGACGCCAGCAAGGA
CTCCATTCTGCGTCGCGCCCGCGGCATGTTCAATCCGGAGGATCTGGTGCGCTAA

Alignment

ORF - retro_dmel_20 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.85 %
• Parental protein coverage: 97.58 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSSHTEDLGRLLAVIGDEDTCVGFLLGGIGEVDEDRETNFMVVERDTTPKQIEECFKKFLRRPDIVIILI
          M..H....G.L..VIGDEDTCVGFLLGG.GE....R..NFMVV...T.....E.CFK.FL.R.DI.IILI
Retrocopy MALHSAIKGKLISVIGDEDTCVGFLLGGVGEINKNRHPNFMVVDKNTAVSELEDCFKRFLKRDDIDIILI

Parental  NQVYADMIRPTVDAHNLAVPTVLEIPSKQHPYDSSRDSILKRAQRVITPPE
          NQ..A..IR...DAH...VP.VLEIPSK.HPYD.S.DSIL.RA.....P..
Retrocopy NQNCAELIRHVIDAHTSPVPAVLEIPSKDHPYDASKDSILRRARGMFNPED

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_20 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_20 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0037402	1 retrocopy	retro_dmel_20 ,