RetrogeneDB ID: retro_dmel_29

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: X:4678230..4679670(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0029727
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: Picot
• Ensembl ID: FBgn0024315
• Aliases: None
• Description: Picot [Source:FlyBase gene name;Acc:FBgn0024315]

Sequence

>retro_dmel_29
ATGACCGACACCGCTGGAGTGTACGACTCCAAAGGGGTCAGTAATCGGAATCGCAGTGATCAGGAGGTCAGGATGGAGCG
CTACGCCTCCGATGGGCAAATTCCCAGGTGCCGAAAGACCCGATTCTTCGTCGTCCTGATGCTCTTCTCGGGAATGGCCA
ATGCCTATGTGATGCGCACAAATATGTCTGTGGCGATTGTTGCCATGGTCAACCACACGGCAATCTCGCATACCAAGTCG
TCGACTCAATCGAAGGAACGGGATGGTGACTTCGAGTGGAGTTATAAGCTGCAGGGCTACATCCTTTCTAGCTTCTTCTA
TGGCTATGTGATAACCCAAATACCCTTTGGCCTGATGATCAAATACTACGGTGCTCGGCATTTTCTCGGCTGGGGCATGA
TGATCAACTCGTTGGCCGCCTTCTTTATTCCGATCTCGGCAAGATCGGGTGGCGTCGTCGGTCTGTGTGTGGTGCGTTTC
ATCCAGGGCCTGGGCGAGGGACCCATTGTGCCCTGCTCCCACTCTTTGCTGGCCCAGTGGGTTCCCCCGAACGAGAGATC
ACTGGCCGGAGCAGCGGTCTACGCAGGTGCCCAGTTTGGTACCATAGTATCTATGCCATTGAGTGGACTTCTGGCTCACT
ACGGTTTCGATGGCGGCTGGCCATCGATCTTCTATATCTTCGGGCTGTTCAGCACCATCTGGTGTATCATCTTTATTTGC
CTGGTGCAGGAGAGTCCGGCCGTGAGTACTCGCATCTCGGAGGCGGAGAGGCGACACATCATGGAGGCCATTTGGCAGGC
ACAGCCGGAGGAAAGGAGCCGGATACCCTTTCTGGGCATTGCCAAATCGCCACCCTTTTATGCCATACTGGTGGCCCATG
CCGGGCACAATTATGGCTATGAAACGCTGATGACCATGCTGCCCACCTATATGTACAGAGTTCTCAATGTGAACATTCGC
ACAAATGGCATAATATCCTCGCTGCCCTACCTGGCCATGTGGATTCTGGCCATTGTGTTTGGCATCCTGGCGGATTGCCT
CATCCGGCGGAATTTCTCCATCACCGTAGTTCGCAAGTTGATGAACAGCCTGGGCCAGTACGGACCTGCCGTGGCCCTAA
TCTCCGTGGGCTTTGTACACCACAGCCTCTGGCTGACTAGCGTGATTTTCATCCTGGGCATGGGACTCAACGGTGCCATC
TACTGCGGCTTCAAGATCAATCATCTGGACCTGTCGCCGCGCTTTGCCGGCCTGCTAATCTCCGTAACCAATTGCGTGGC
CAACTTGGTGGGTCTGATGGCGCCCATGGTGGCCGGTCATGTGATCGATCCCAAGCCGAGCGTGGAGAACTGGAGGATTG
TATTTTATATTGCTGCTGGTGTGTTTATTTTCACAGCCAGTTTTTATAACGTATTTGCCAGCGGCAAGCAGCAATGGTAA

Alignment

ORF - retro_dmel_29 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.62 %
• Parental protein coverage: 76.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QDGEFAWSSALQGYILSSFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGGVWGLC
          .DG.F.WS..LQGYILSSFFYGYVITQIPFG...K.YG...FLG.GM.INS..AF..P..AR.GGV.GLC
Retrocopy RDGDFEWSYKLQGYILSSFFYGYVITQIPFGLMIKYYGARHFLGWGMMINSLAAFFIPISARSGGVVGLC

Parental  AVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTIISMPLSGLLAEYGFDGGWPSIFYV
          .VRFIQGLGEGPIVPC.H..LA.W.PPNERS..GAAVYAGAQFGTI.SMPLSGLLA.YGFDGGWPSIFY.
Retrocopy VVRFIQGLGEGPIVPCSHSLLAQWVPPNERSLAGAAVYAGAQFGTIVSMPLSGLLAHYGFDGGWPSIFYI

Parental  FGIVGTVWSIAFLIFVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIPFKAIIKSLPFYAILFAHMGH
          FG...T.W.I.F...V.E.P.....I.E.E...I....W.........IPF..I.KS.PFYAIL.AH.GH
Retrocopy FGLFSTIWCIIFICLVQESPAVSTRISEAERRHIMEAIWQAQPEERSRIPFLGIAKSPPFYAILVAHAGH

Parental  NYGYETLMTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRFSHTATRKLINSIG
          NYGYETLMT.LPTYM..VL......NG..SSLPYLAMW.........AD..I....FS.T..RKL.NS.G
Retrocopy NYGYETLMTMLPTYMYRVLNVNIRTNGIISSLPYLAMWILAIVFGILADCLI-RRNFSITVVRKLMNSLG

Parental  QYGPGVALIAASYTGCDRALTLAILTIGVGLNGGIYSGFKINHLDLTPRFAGFLMSITNCSANLAGLLAP
          QYGP.VALI..........LT..I...G.GLNG.IY.GFKINHLDL.PRFAG.L.S.TNC.ANL.GL.AP
Retrocopy QYGPAVALISVGFVHHSLWLTSVIFILGMGLNGAIYCGFKINHLDLSPRFAGLLISVTNCVANLVGLMAP

Parental  IAAGHLISDPSKPMMGQWQIVFFIAAFVYIICGTFYNIFGSGERQY
          ..AGH.I.DP.KP....W.IVF.IAA.V.I....FYN.F.SG..Q.
Retrocopy MVAGHVI-DP-KPSVENWRIVFYIAAGVFIFTASFYNVFASGKQQW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_29 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_29 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0010497	1 retrocopy	retro_dmel_46,
Drosophila melanogaster	FBgn0024315	1 retrocopy	retro_dmel_29 ,