RetrogeneDB ID: retro_dmel_31

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2L:10693031..10694060(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0032285
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: Cpr47Ef
• Ensembl ID: FBgn0033603
• Aliases: None
• Description: Cuticular protein 47Ef [Source:FlyBase gene name;Acc:FBgn0033603]

Sequence

>retro_dmel_31
ATGCGTCTGTTTATAGTGCTGAGTGTTTGTGTGGCGTTAGCTTCCGCCGGAGGTTACGGCGGTGGAGGCGGAGGTGGTGG
TGGTGGACACGCCGGAGCATCCGCTTCCTCGTCCGCTTCTGCCGGTGCGATTGGCGGCGGTGATGGAGGCGGTAAGCTCG
GCGGAGGTTATGGATCTGGTGGTCACGGTTCTGGAGGACTTGGATCTGGCGGTTTCGGCTCTGGCGGTGATTTAGGACTT
GGAGGCGGCGGTGTCGGAGGAGGTCCCTTCGCAGGTGGCCATGCTGGCGGTGGAGTGATCTCCGGCGGAGGTCATTCTGG
AGGTGGAGGCGGATTCGGTGGCGGTCCCGGATTCGGATCAGGTGGTCATTCCGGTGGAGGAATCGGTGACGGCCCTGGAT
TTGGATCAGGTGGATATTCCGGAGGAGGTGGCGGAATCGGCGGTGGAGGTGGCCATTCTGGTGGAGGTAGCGGAATCGGT
GGCGGCCCTGGATTTGGTGGCGGAATCGGCGGCGGAGGTGGCCATTCTGGTGGAGGCGGTGGAATCGGCGGCGGTCCTGG
ATTTGGTGGAGGAATCGGCGGATCCGGTAGCTCTGCATCATCTTCAGTTGGAGTTATTGGTGGAGGTCATGGCGGCGGAG
GTCACGGCGGAGGAGGCTTCGGACCTGGTGGAGGAGGTGGAGGAGGCTTCGGACCAGGTGGAGGAGGCTTTGGACCCGGC
ATTGGAGGTGGCGGTGGAGGCTTTGGCCCCGGCATTGGAGGCGGATCCGGTGGTGGACACTTTGGTGGTGGTCTTAGCCA
CAAGCACAAAGGCCATGGAGGCGGAGGCGGCTTCAAAGGCGGATACGGCGGCGGCGGCGGCGGAGGCGGAGGCGGCGGTG
GCGGCTACGGAATTGGACCTGCAGTCTCCTTAGGTGGCGGACCAGGCGGTGGTGGTAGCTACGGAGGTGGCTACGGAGGT
GGCTCCGGAGCCTCTGCTTCAGCCAGTGCCAGTGCCTCAGCAGGAGCAGGCGGCGGCTATCATGGCTAG

Alignment

ORF - retro_dmel_31 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.06 %
• Parental protein coverage: 54.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GAGGGGGGGSGYGGGSGFGGGGAGGGSGGGGGGAGGGGGYGSGGGSGRGGAPGGPGAPGGGGFGGQGGGG
          G.GGGGGGG.G...G.........G..GGG.GG...GGGYGSGG....G...GG.G..G..G.GG.G.GG
Retrocopy GYGGGGGGGGGGHAGASASSSASAGAIGGGDGGGKLGGGYGSGGHGSGGLGSGGFGSGGDLGLGGGGVGG

Parental  GYGGAGGGAGRGGSPGGPGSPGGGGFGGQGGAGGGYGGGGGGGRGGGGAPGAPGSPGGGGFGGQGGGGGF
          G...AGG.AG.G...GG..S.GGGGFG..GG.G.G.GG..GGG.G.G...G..G..GGGG.G..GGGG..
Retrocopy G-PFAGGHAGGGVISGGGHSGGGGGFG--GGPGFGSGGHSGGGIGDGPGFGSGGYSGGGG-GIGGGGGHS

Parental  GGGGGRGGAPGAPGSPGGGG--YGGQGGAGGGYGGGGGRGGGGAPGAPGAPGSPGGGGFGGQGGGGGFGG
          GGG.G.GG.PG..G..GGGG...GG.GG.GGG.G.GGG.GG.G...A....G..GGG..GG..GGGGFG.
Retrocopy GGGSGIGGGPGFGGGIGGGGGHSGGGGGIGGGPGFGGGIGGSGS-SASSSVGVIGGGHGGGGHGGGGFGP

Parental  GGGRGGAPGAPGGGGGYG-GGAGRGGAPGAPGSPGGGGFGGQGGGGGFGAGGGRGGAGGAPGGPGSPGGP
          GGG.GG..G..GGG.G.G.GG.G.G..PG..G..GGG.FGG.......G.GGG.G..GG..GG.G..GG.
Retrocopy GGGGGGGFGPGGGGFGPGIGGGGGGFGPGIGGGSGGGHFGGGLSHKHKGHGGGGGFKGGYGGGGGGGGGG

Parental  GYGGGAGGPGGAGGRPGGPGLPGNQYVPPAAGGGAPGSPGRPGSGGVPG
          G.G.G.G.....GG.PGG.G..G..Y.....G.GA..S.....S.G..G
Retrocopy GGGYGIGPAVSLGGGPGGGGSYGGGY---GGGSGASASASASASAGAGG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_31 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_31 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0033603	1 retrocopy	retro_dmel_31 ,