RetrogeneDB ID:

retro_dmel_43

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:3R:5946244..5947096(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0037789
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:gammaSnap
Ensembl ID:FBgn0028552
Aliases:None
Description:gamma-soluble NSF attachment protein [Source:FlyBase gene name;Acc:FBgn0028552]


Retrocopy-Parental alignment summary:






>retro_dmel_43
ATGAGCACTCTTGATGCCAAAAAGATAGAAGAGGCGGAGGCCTTGATAGGACAGACGGATAGTGCCGCGAATGAGTATGC
CAAAGCTGGTATGTATTTCAAGGCAGCAACCGCATATCGAATTGCCAAAAGTTTCGATAAGCGCAAGGATTGTCTTTTGA
AGGCCATCGACTGTTACGAAAACAACAAGTCATGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTTGCCAAA
GAAACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGCTTGCTGTCTCTACCAGCAACATGGTTCGCCGGAAGC
AGCAGCTGCTGCTCTCGATAAAGCCGCCAAAATGACGGAATCCAAGCATCCTGACTTGGCTTTGGGATTTTACAAACGCG
CCCTGGCAGTCGTCTTGATTGGGGACTCCACTCATCAGGCATCGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGA
CTCAAAAAATATGAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAATCTGCAGACAAAGTCTTACGGACAAGT
TGGCCGTTTAGTAGTTGCTTTAATACTGGTACAATTAACACTAGAGGATTACGTGGATGCCAAGAAGACCTTCAAGAAAT
GGGGAAACCGTTGTGATCCCCAGGAGGTGAACACATTACAAAACCTACTCAAAGCTTTTGACGACGAGGATCCTGAGCTG
GCCACCAAGATGCTGGCATCTCCATTCATAAGACACATGGACGTGGAGTACGCACTTTTATCTAAAGATGTGCCATTACC
AAAAGGAAATCGTCAAATGACCAAAAATGCAGTCGACAATGCCGCAAACTAA

ORF - retro_dmel_43 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.83 %
Parental protein coverage: 83.77 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalADEYSKAATAYRIAKSYDKSKECFLKAIDAYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEYANKSASL
A..Y.KAATAYRIAKS.DK.K.C.LKAID.Y.NNKSWFHAAK.YEQIILL.K..DKL.EVE.YAN....L
RetrocopyAGMYFKAATAYRIAKSFDKRKDCLLKAIDCYENNKSWFHAAKSYEQIILLAKETDKLSEVEDYANRACCL
ParentalYQQHGSPEAAASALDKAAKLTESKHPDMALRFYQHALEVIMIEDSVRQAAEYASKVSRILVKLRRYDEAT
YQQHGSPEAAA.ALDKAAK.TESKHPD.AL.FY..AL.V..I.DS..QA.E.ASKVSRILV.L..Y.EAT
RetrocopyYQQHGSPEAAAAALDKAAKMTESKHPDLALGFYKRALAVVLIGDSTHQASEFASKVSRILVRLKKYEEAT
ParentalNALKKEISLNQQTESYGQIGRLVVALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQTLLQAFDDEDP
.ALKKEISLN.QT.SYGQ.GRLVVAL..VQL...D.V.A.KTF..WGN.C.P.EV.TLQ.LL.AFDDEDP
RetrocopyKALKKEISLNLQTKSYGQVGRLVVALILVQLTLEDYVDAKKTFKKWGNRCDPQEVNTLQNLLKAFDDEDP
ParentalELAARMLASPFIRHMDVEYAILSKNIPLPQG-IQMEKKAGDTAA
ELA..MLASPFIRHMDVEYA.LSK..PLP.G..QM.K.A.D.AA
RetrocopyELATKMLASPFIRHMDVEYALLSKDVPLPKGNRQMTKNAVDNAA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_43 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_43 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Drosophila melanogaster FBgn0028552 1 retrocopy
retro_dmel_43 ,



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