>retro_dmel_43
ATGAGCACTCTTGATGCCAAAAAGATAGAAGAGGCGGAGGCCTTGATAGGACAGACGGATAGTGCCGCGAATGAGTATGC
CAAAGCTGGTATGTATTTCAAGGCAGCAACCGCATATCGAATTGCCAAAAGTTTCGATAAGCGCAAGGATTGTCTTTTGA
AGGCCATCGACTGTTACGAAAACAACAAGTCATGGTTCCATGCAGCCAAATCCTACGAGCAGATTATCCTGCTTGCCAAA
GAAACGGACAAACTGTCCGAAGTGGAGGACTATGCCAATAGGGCTTGCTGTCTCTACCAGCAACATGGTTCGCCGGAAGC
AGCAGCTGCTGCTCTCGATAAAGCCGCCAAAATGACGGAATCCAAGCATCCTGACTTGGCTTTGGGATTTTACAAACGCG
CCCTGGCAGTCGTCTTGATTGGGGACTCCACTCATCAGGCATCGGAATTTGCATCGAAGGTTTCCCGGATATTGGTCAGA
CTCAAAAAATATGAAGAAGCCACGAAAGCCCTCAAAAAGGAAATAAGCCTAAATCTGCAGACAAAGTCTTACGGACAAGT
TGGCCGTTTAGTAGTTGCTTTAATACTGGTACAATTAACACTAGAGGATTACGTGGATGCCAAGAAGACCTTCAAGAAAT
GGGGAAACCGTTGTGATCCCCAGGAGGTGAACACATTACAAAACCTACTCAAAGCTTTTGACGACGAGGATCCTGAGCTG
GCCACCAAGATGCTGGCATCTCCATTCATAAGACACATGGACGTGGAGTACGCACTTTTATCTAAAGATGTGCCATTACC
AAAAGGAAATCGTCAAATGACCAAAAATGCAGTCGACAATGCCGCAAACTAA
ORF - retro_dmel_43 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.83 % |
Parental protein coverage: |
83.77 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | ADEYSKAATAYRIAKSYDKSKECFLKAIDAYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEYANKSASL |
| A..Y.KAATAYRIAKS.DK.K.C.LKAID.Y.NNKSWFHAAK.YEQIILL.K..DKL.EVE.YAN....L |
Retrocopy | AGMYFKAATAYRIAKSFDKRKDCLLKAIDCYENNKSWFHAAKSYEQIILLAKETDKLSEVEDYANRACCL |
|
Parental | YQQHGSPEAAASALDKAAKLTESKHPDMALRFYQHALEVIMIEDSVRQAAEYASKVSRILVKLRRYDEAT |
| YQQHGSPEAAA.ALDKAAK.TESKHPD.AL.FY..AL.V..I.DS..QA.E.ASKVSRILV.L..Y.EAT |
Retrocopy | YQQHGSPEAAAAALDKAAKMTESKHPDLALGFYKRALAVVLIGDSTHQASEFASKVSRILVRLKKYEEAT |
|
Parental | NALKKEISLNQQTESYGQIGRLVVALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQTLLQAFDDEDP |
| .ALKKEISLN.QT.SYGQ.GRLVVAL..VQL...D.V.A.KTF..WGN.C.P.EV.TLQ.LL.AFDDEDP |
Retrocopy | KALKKEISLNLQTKSYGQVGRLVVALILVQLTLEDYVDAKKTFKKWGNRCDPQEVNTLQNLLKAFDDEDP |
|
Parental | ELAARMLASPFIRHMDVEYAILSKNIPLPQG-IQMEKKAGDTAA |
| ELA..MLASPFIRHMDVEYA.LSK..PLP.G..QM.K.A.D.AA |
Retrocopy | ELATKMLASPFIRHMDVEYALLSKDVPLPKGNRQMTKNAVDNAA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_43 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_43 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.