RetrogeneDB ID: retro_dmel_5

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2R:9916238..9916571(+)
• Located in intron of: FBgn0002643

Retrocopy information

• Ensembl ID: FBgn0033893
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG34161
• Ensembl ID: FBgn0085190
• Aliases: None
• Description: None

Sequence

>retro_dmel_5
ATGATGCAGCCAGCGGAACAGATCTTCTCCTGCGGATTCGAACTCTTCGGGCGAGTACAGGGTGTGTGTTTGCGGAAGCA
GACACGAGATCTGGCCACAATGAACCAGGTGCGCGGGTGGGTGATGAACACGGACGAGGGCACGGTGAAGGGACAGCTGG
AGGGCACACTGCCCAAGGTCAACGTGCTGAAGTTCTGGCTACTGAATATCGGCAGTCCGCGCTCGATTATCGAGCGGGCG
GAATTCACGCCCACCAAGGAGATCACTTCGCACAACTTTAGCCGATTCTCGATTCGCTACCACAATGTGGCAGCAACGAA
AAAGGCCATTTAA

Alignment

ORF - retro_dmel_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.61 %
• Parental protein coverage: 74.4 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QIFSCQFEVFGHVQGVFFRKHTQKKAIELGITGWCMNTTQGTVQGMLEGSLDQMTDMKYWLQHKGSPRSV
          QIFSC.FE.FG.VQGV..RK.T...A......GW.MNT..GTV.G.LEG.L......K.WL...GSPRS.
Retrocopy QIFSCGFELFGRVQGVCLRKQTRDLATMNQVRGWVMNTDEGTVKGQLEGTLPKVNVLKFWLLNIGSPRSI

Parental  IEKAVFSENEPLPINNFKMFSIR
          IE.A.F.........NF..FSIR
Retrocopy IERAEFTPTKEITSHNFSRFSIR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_5 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_5 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Ictidomys tridecemlineatus	ENSSTOG00000007327	1 retrocopy	retro_itri_423,
Drosophila melanogaster	FBgn0085190	1 retrocopy	retro_dmel_5 ,