RetrogeneDB ID:

retro_dmel_50

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:X:16417334..16419254(-)
Located in intron of:FBgn0264255
Retrocopy
information
Ensembl ID:FBgn0264077
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Cnx99A
Ensembl ID:FBgn0015622
Aliases:None
Description:Calnexin 99A [Source:FlyBase gene name;Acc:FBgn0015622]


Retrocopy-Parental alignment summary:






>retro_dmel_50
ATGGCTTGGAAAATGCTCTTCGCCATTTTGTTGCTGCTGAGTGCGGCCAAAACCGGCTATTTGGCCCCGGAGTCGGAAAA
CTCTGTGGAGGATGTGCAGATAGAGCCCGGCGCCATCTATGGCGATGAGAAGTTTGCCTACAAGAGTCCGGTGATCGATG
CCGAAAAGTTTTACTTTGCGGATCACTTCGACGACGTGGAGGCATCCCGAAAGAGATGGGTACTGTCGCAGGCCAAGAAG
AACGACATCGCCGATGAGATAGCCAAATACGATGGCATCTGGAACTGGGAGTCTCCGCAACGCATCTTTTGGGCAAACGA
TCTGGGTCTGGTGCTCAAGTCGAAGGCCAAGCATGCGGCCATAGCCGCCCCCTTTCGCCAGCCGTTCGATTTCAAGTCGA
ACAAGCCGCTGGTGGTGCAGTACGAGCTTACGTTGCAGGAGGGTCAGGACTGTGGCGGCTCGTATCTGAAGCTTTTGTCC
GCCGGAAAAGGCACGGAGCAACTAAATCGCTTCAATGACAAGACACCCTATACCATCATGTTTGGTCCGGACAAGTGCGG
CAACAATTTGAAAATGCACTTTATATTCCGGCACGTCAATCCATTAAATGGCAACATCACCGAAAAGCACTGCAAAAAGC
CAAATGCCCGTTTGGGAGTGCCATTCACGGACAAGCTACCCCATCTCTACCAGCTGGTGGTCCGTCCCGATAACAGCTTT
GAGATTCGCTTAGACCACAAGATCATCAAAGAGGGTTCCCTGCTGACCGACTTTGTGCCACCAGTCAACCCACCGGCGGA
GATAGATGACCCCAATGACCACAAGCCAGAATCGTGGGATGAGCGGAAGAAGATCCCAGACCCCAATGCCCACAAGCCCG
AGGATTGGGACGAGGATGCTCCACCACATCTGCCCGATACCGATGCCGTCATGCCAAATGGCTGGCTAGAGGATGAGCCC
GACATGATTTTCGATCCAACTGCCATCGAACCCGAAGATTGGAATTCCGAAATCGATGGCGAGTGGGAGGCTCCTCTGGT
GGAGAACCCAGTGTGCAAGAAGGCCCCCGGCTGTGGCAAGTGGAAGGCTCCGCTCATCCCCAATCCCAACTACAAGGGCA
AGTGGAGTGCACCAATGATCGAGAACCCCAACAACCAGGGCAAGTGGGCTCCCAGGAAGATAGCCAATCCAGACTTCTTT
GAGGATCTGAAGCCCTTCCAAATGACGCCAATCAACGCTGTGGGTCTGGAGCTGTGGTCCATGTCCAGCGATATTCTCTT
CGATAACCTGATCATCACGGACGATGTGGAGTTGGCCCGTGACTTTGCTGCCAACAGCTTCGACATCAAGCGTCTCTACA
TCGATCGTGAATCATTCGGGAATAAGGTAGTCGAGCTAGCTAGGGCCAATCGAGCGATCTGGGGCATTGTCATAGTGGCC
ATTGCGGTGCCGGTTGCCATTACCATCTTCTGTAAATTTGGTTTAGGCCCGAGTAGGGTTGCGGCTGCCAAAAAAGCTGC
TGCTGCCGCGGCCAAGAAGACCGACGATCCTCAGCCCGATGATGACCTGGGGGCCGAGGAGGAGGAAAAGTTGGAGAAGG
GGAAGAAGGAGGAGGAAAAGAAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGAATAAGGAGGAAAAGAAGGAGGAGGAG
AAGGATGACGAGAAGGAGATGAAGGATTGCGAGGAGGAGGAGGATGACGAGGAGAAGGATGACGAGGAGAAGACCGACGA
AAGGGCCGCTGGTGATACCAACAAGGAAAGCACACCGCTGTCCGCTAGTCCCAAGAAGAACCAAAAGTCTTATTTAGATA
ATAACGAAGATGAGGAAGACACATTAAAGAACAAGGAACCTACCCCAAAAAAAAGGAAGCGTAAAGCACTCAAGGAGTAA

ORF - retro_dmel_50 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.39 %
Parental protein coverage: 97.19 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLLFASSLLLLSAANAADLDTESDDFEDGYVEDVQEEPAVIGGDEKLAYESPVIDAKKFHFADHFDDVEES
.LFA..LLLLSAA....L..ES.......VEDVQ.EP..I.GDEK.AY.SPVIDA.KF.FADHFDDVE.S
RetrocopyMLFAI-LLLLSAAKTGYLAPES----ENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEAS
ParentalRKRWVLSQAKKDDIAEEISKYDGIWNWESPQRIVWANDLGLVLKSKAKHAAIAAPLRKPFEFKSDKPLVV
RKRWVLSQAKK.DIA.EI.KYDGIWNWESPQRI.WANDLGLVLKSKAKHAAIAAP.R.PF.FKS.KPLVV
RetrocopyRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVV
ParentalQYEVTLQEGQECGGSYLKLLSAGKDTEQLKAFNDKTPYTIMFGPDKCGNDVKMHFIFRHVNPINGTITEK
QYE.TLQEGQ.CGGSYLKLLSAGK.TEQL..FNDKTPYTIMFGPDKCGN..KMHFIFRHVNP.NG.ITEK
RetrocopyQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEK
ParentalHCNKPKNRLEEPFKDKLPHLYQLVVRPDNSFEIRVDHKIINEGSLLTDFKPPVNPPAEIDDPNDHKPESW
HC.KP..RL..PF.DKLPHLYQLVVRPDNSFEIR.DHKII.EGSLLTDF.PPVNPPAEIDDPNDHKPESW
RetrocopyHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESW
ParentalDEREKIPDPTAHKPEDWDEDAPPQLPDTDAVMPNGWLEDEPDMIFDPTATKPEDWDAEIDGEWEAPLVDN
DER.KIPDP.AHKPEDWDEDAPP.LPDTDAVMPNGWLEDEPDMIFDPTA..PEDW..EIDGEWEAPLV.N
RetrocopyDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVEN
ParentalPVCEKAPGCGKWKAPLIPNPNYKGKWRAPMIENPNYQGKWAPRKIPNPDFFEDLKPFQMTPISAVGLELW
PVC.KAPGCGKWKAPLIPNPNYKGKW.APMIENPN.QGKWAPRKI.NPDFFEDLKPFQMTPI.AVGLELW
RetrocopyPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELW
ParentalSMSSDILFDNLIITDDVEVARDFAANSFDIKRRYIDRESDSFVNKVVELAKANPSIWGIGLVAIVALVAL
SMSSDILFDNLIITDDVE.ARDFAANSFDIKR.YIDRE..SF.NKVVELA.AN..IWGI..VAI...VA.
RetrocopySMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRE--SFGNKVVELARANRAIWGIVIVAIAVPVAI
ParentalTIYCRFGTAKSQDSAAKK-AAAEAKKSDDPQPDDEPEAEEESD-ERAAGDTSKESTPLSASPKKN---QK
TI.C.FG...S...AAKK.AAA.AKK.DDPQPDD...AEEE...E.......K...........N....K
RetrocopyTIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKK
ParentalSDLDDNEEESKAAESREPAQTEESNTKTRKRQA
....D.E.E.K..E..E.........KT..R.A
RetrocopyEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Drosophila melanogaster was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_dmel_50 retrocopy.

TSS - click to see more details

Drosophila melanogaster was not studied using FANTOM5 data.

Lab - click to see more details

retro_dmel_50 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Monodelphis domestica ENSMODG000000037082 retrocopies
retro_mdom_1933, retro_mdom_747,
Drosophila melanogaster FBgn0015622 2 retrocopies
retro_dmel_33, retro_dmel_50 ,


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