>retro_dmel_59
ATGATATCGTTTCTGTTAAAACGCCGAGCTTGTGATGCTTACAAGATTTCATTAGGACTAACTCGTGCATATAGAGCCTT
AACAGAAGTAAAAAGCCTTCAAAATGCCTTACGACCTGGTAATAAAACTGGAAATATCAAGCTGGTAAACATATACCGAA
CTTCTAGCATACAAAATGTGAAGAAGAACCAACTAAGTGACGCTGAAAGCGTTATTCCACTCTTATTGCGGCCAGCCAAA
CCTGTGCTGATTATGAGAGAAGGATCTCAAACCGATTGTAACGACGATTTGCTGTCCTCTGAGCAAAGAGCCAAAAAAAG
GGAAAGCATAAAAAAATCCGAAGTAGATTGCCCAAAATTTCCAGCTGAGAAACTTCCGCCCACAACGAAATTTCCTATTA
ATGAAAATGCCAAGAAGGTTTTAGATCCAGCCGACCAAAGAGAACTCGAGGCCAATTTGTTAAAAAGGCTTAAAGATATG
GCTAAAAGAAAGAAATCTCGACTAGATGAGAAAGTTGACGAGCTGAGGGATAATTTTATAGGCTGGAATTATGCTGCTCT
ACAAGGAAGAACTATTGTGACTGTGGATGCCAAGGAATCAACTCCACCGAAAGGATCTGGGCCGGCCACCCCGGCAGGCT
CTCCTCCACCTAAAAATGTTTCTGCACCGCCGACGGGCGGTTCTCCGCCTGCCAAAAGCGGCGCTCCACCACCCCCAAAG
GGGCCACCGCCCGGAACTCCACCACCGCAGACGAAAACTACTTTTGGACCACTTGCTGATGCTGATCGAATCTTTACCAA
TTTATACGGACGGCACGATTGGCGATTGAAGGCAGCAATGAAGCGCGGTGACTGGTACAAGACGAAGGAGATCATAGCCA
AGGGTGACAAGTGGATAGTCAACGAGATTAAGACATCTGGACTGCGAGGACGCGGTGGCGCCGGATTTCCCAGTGGACTT
AAGTGGTCATTTATGCATAAACCGCCTGATGGAAGACCCAAGTTTCTGGTGGTCAATGCGGATGAAGGAGAGCCCGGTAC
TTGCAAGGATCGTGAGATAATGCGCCATGATCCACACAAACTGGTAGAGGGATGTCTCATTGCTGGACGGGCTATGGGTG
CCAACACTGGTTTTATTTACATTCGCGGAGAGTTTTACAACGAAGCTTGCAATCTTCAGTATGCCATTATTGAGGCCTAT
AAGGCTGGCTACCTGGGAAAGAATGCCTGCGGTTCTGGGTTCGATTTCGATCTTTATGTGCAACGTGGAGCAGGAGCCTA
TATTTGCGGTGAGGAAACCTCTCTGATTGAATCCCTGGAGGGCAAGGCGGGTAAGCCAAGGAACAAGCCTCCCTTTCCGG
CTGATATCGGCGTCTTTGGCTGTCCGTCTACGGTGACCAATGTGGAAACGGTGGCCGTGTCTCCCACTATTTGCCGGCGT
GGTGGCAATTGGTTTGCCAGCTTTGGACGTACCCGAAACTCTGGCACCAAGCTGTTTAATATCTCTGGTCATGTTTGCAA
CCCTTGTACCGTCGAGGAGGAGATGTCCATGCCAACCAGAGAGCTTATCGAACGCCATGCTGGCGGAGTGATCGGGGGCT
GGGACAATCTACTGGCCATCATTCCGGGTGGCTCCTCCACTCCCTGCATTACCAAGGAGCACGCCTCGAGTGCGATTCAC
GACTACGATGGGCTGATGGCAGTGCGTTCGTCCATGGGAACGGGTGCCTTAATTGTTATGAATAAGGATACGGACATTAT
CAAGGCCATTGCCCGATTATCGGCTTTCTATAAGCACGAGAGCTGCGGCCAGTGCACTCCTTGCCGCGAGGGTCTCCACT
GGGTGAACATGATCATGCATAGATTTGTGACAGGACAGGCGCAAATTGCAGAGATCGATATGCTGTTCGAACTGACGAAG
CAGATCGAGGGACATACCATTTGTGCCCTGGCCGATGGTGCTGCTTGGCCGCCCCAAGGACTCATCCGGAACTTCCGACC
GGTCATCGAGGAGAGGATCAAGAAGCGGGCGGCCGAGGACCAAGCTAAAGCTGAAGCACTCGAAGCCGAACGTTTCCCTT
GTCAAACGGTGACTCCTTGTCCAGAATAA
ORF - retro_dmel_59 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.68 % |
Parental protein coverage: |
92.41 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | QAPPPGTPPPQTKTKFGPLADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLR |
| ..PPPGTPPPQTKT.FGPLAD.DRIFTNLYGRHDWRLK.A.KRGDWYKTKEI..KG..WIVNEIKTSGLR |
Retrocopy | KGPPPGTPPPQTKTTFGPLADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLR |
|
Parental | GRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYI |
| GRGGAGFPSG.KWSFM.KP.DGRPK.LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA....I |
Retrocopy | GRGGAGFPSGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTGFI |
|
Parental | YIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLK |
| YIRGEFYNEA.N.Q.AI.EAY.AG..GKNACG.G.DFD....RGAGAYICGEET.LIESLEGK.GKPR.K |
Retrocopy | YIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIESLEGKAGKPRNK |
|
Parental | PPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRPCTVEEEMSIPL |
| PPFPAD.GVFGCP.TVTNVETVAV.PTICRRGG.WFASFGRTRNSGTKLFNISGHV..PCTVEEEMS.P. |
Retrocopy | PPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTKLFNISGHVCNPCTVEEEMSMPT |
|
Parental | KELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKA |
| .ELIERH.GGV.GGWDNLL..IPGGSSTP.I.K......I.D.DGL.A...S.GT.A.IVM.K.TD.IKA |
Retrocopy | RELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASSAIHDYDGLMAVRSSMGTGALIVMNKDTDIIKA |
|
Parental | IARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQ |
| IARL..FYKHESCGQCTPCREG..W.N.IM.RFV.G.AQ.AEIDML.E..KQIEGHTICAL.DGAAWP.Q |
Retrocopy | IARLSAFYKHESCGQCTPCREGLHWVNMIMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQ |
|
Parental | GLIRHFRPEIEKRMQLHA |
| GLIR.FRP.IE.R....A |
Retrocopy | GLIRNFRPVIEERIKKRA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
4 EST(s) were mapped to retro_dmel_59 retrocopy
EST ID |
Start |
End |
Identity |
Match |
Mis-match |
Score |
AI946900 |
13483773 |
13484196 |
99.3 |
420 |
3 |
417 |
BF498010 |
13482781 |
13483378 |
99.5 |
592 |
3 |
589 |
BF498897 |
13483785 |
13484190 |
99.3 |
402 |
3 |
399 |
BF505939 |
13482771 |
13483431 |
99.1 |
654 |
6 |
648 |
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_59 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.