>retro_dmel_60
ATGGGCAACAACGCCACCACGTCGAATAAGAAGGTCGATGCCGCCGAGACGGTGAAGGAGTTCCTCGAGCAGGCCAAGGA
GGAGTTCGAGGACAAGTGGCGACGCAATCCGACCAACACCGCCGCCCTCGATGACTTCGAACGGATCAAGACCCTGGGCA
CCGGCTCCTTTGGCCGTGTCATGATCGTCCAGCACAAGCCCACGAAAGACTATTATGCCATGAAGATCCTCGACAAGCAG
AAGGTGGTCAAGCTGAAGCAGGTGGAGCACACGCTGAACGAGAAGCGAATCCTGCAGGCCATTCAGTTCCCCTTCCTCGT
CTCGCTGCGCTACCACTTCAAGGACAACTCCAACCTTTACATGGTGCTGGAGTATGTTCCCGGTGGCGAGATGTTCTCCC
ACCTGCGCAAGGTGGGCCGCTTCTCGGAGCCGCACTCGCGCTTCTACGCGGCGCAAATCGTGCTGGCCTTCGAGTACCTG
CACTACTTGGACCTCATCTACCGTGATCTGAAGCCGGAGAATCTGCTGATTGACTCGCAGGGCTACCTCAAGGTGACGGA
CTTCGGTTTTGCCAAGCGGGTCAAGGGACGCACCTGGACACTGTGCGGCACGCCCGAATACCTGGCCCCGGAGATCATTC
TGTCCAAGGGCTATAACAAGGCCGTGGACTGGTGGGCGTTGGGCGTACTCGTCTACGAAATGGCCGCCGGCTATCCGCCG
TTCTTTGCGGATCAGCCGATTCAGATCTACGAGAAGATCGTCTCCGGCAAGGTGCGCTTCCCATCGCACTTTGGCTCCGA
TCTGAAGGACCTACTGCGCAACCTGCTGCAGGTGGATCTGACCAAGCGCTACGGCAATCTGAAGGCGGGCGTCAATGATA
TTAAGAACCAGAAGTGGTTCGCCTCCACCGACTGGATTGCGATCTTCCAAAAGAAAATCGAGGCGCCGTTCATTCCGCGG
TGTAAGGGTCCCGGCGACACGAGCAATTTCGATGACTACGAGGAGGAGGCGCTGCGGATCTCCAGCACCGAGAAGTGTGC
CAAGGAGTTTGCTGAATTCTAG
ORF - retro_dmel_60 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
51.8 % |
Parental protein coverage: |
66.8 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | HDSSESIEEDDGNETDDEEDDDESEESSSVQTAKGVRKYHLDDYQIIKTVGTGTFGRVCLCRDRISEKYC |
| .....S....D..ET..E......EE..............LDD...IKT.GTG.FGRV..........Y. |
Retrocopy | NNATTSNKKVDAAETVKEFLEQAKEEFEDKWRRNPTNTAALDDFERIKTLGTGSFGRVMIVQHKPTKDYY |
|
Parental | AMKILAMTEVIRLKQIEHVKNERNILREIRHPFVISLEWSTKDDSNLYMIFDYVCGGELFTYLRNAGKFT |
| AMKIL....V..LKQ.EH..NE..IL..I..PF..SL....KD.SNLYM...YV.GGE.F..LR..G.F. |
Retrocopy | AMKILDKQKVVKLKQVEHTLNEKRILQAIQFPFLVSLRYHFKDNSNLYMVLEYVPGGEMFSHLRKVGRFS |
|
Parental | SQTSNFYAAEIVSALEYLHSLQIVYRDLKPENLLINRDGHLKITDFGFAKKLRDRTWTLCGTPEYIAPEI |
| ...S.FYAA.IV.A.EYLH.L...YRDLKPENLLI...G.LK.TDFGFAK....RTWTLCGTPEY.APEI |
Retrocopy | EPHSRFYAAQIVLAFEYLHYLDLIYRDLKPENLLIDSQGYLKVTDFGFAKRVKGRTWTLCGTPEYLAPEI |
|
Parental | IQSKGHNKAVDWWALGVLIYEMLVGYPPFYDEQPFGIYEKILSGKIEWERHMDPIAKDLIKKLLVNDRTK |
| I.SKG.NKAVDWWALGVL.YEM..GYPPF...QP..IYEKI.SGK.....H.....KDL...LL..D.TK |
Retrocopy | ILSKGYNKAVDWWALGVLVYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFGSDLKDLLRNLLQVDLTK |
|
Parental | RLGNMKNGADDVKRHRWFKHLNWNDVYSKKLKPPILPDVHHDGDTKNFDDYPEK |
| R.GN.K.G..D.K...WF....W.....KK...P..P.....GDT.NFDDY.E. |
Retrocopy | RYGNLKAGVNDIKNQKWFASTDWIAIFQKKIEAPFIPRCKGPGDTSNFDDYEEE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_60 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_60 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.