RetrogeneDB ID:

retro_dmel_60

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:2L:9696504..9697566(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0000273
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Pka-C3
Ensembl ID:FBgn0000489
Aliases:None
Description:cAMP-dependent protein kinase 3 [Source:FlyBase gene name;Acc:FBgn0000489]


Retrocopy-Parental alignment summary:






>retro_dmel_60
ATGGGCAACAACGCCACCACGTCGAATAAGAAGGTCGATGCCGCCGAGACGGTGAAGGAGTTCCTCGAGCAGGCCAAGGA
GGAGTTCGAGGACAAGTGGCGACGCAATCCGACCAACACCGCCGCCCTCGATGACTTCGAACGGATCAAGACCCTGGGCA
CCGGCTCCTTTGGCCGTGTCATGATCGTCCAGCACAAGCCCACGAAAGACTATTATGCCATGAAGATCCTCGACAAGCAG
AAGGTGGTCAAGCTGAAGCAGGTGGAGCACACGCTGAACGAGAAGCGAATCCTGCAGGCCATTCAGTTCCCCTTCCTCGT
CTCGCTGCGCTACCACTTCAAGGACAACTCCAACCTTTACATGGTGCTGGAGTATGTTCCCGGTGGCGAGATGTTCTCCC
ACCTGCGCAAGGTGGGCCGCTTCTCGGAGCCGCACTCGCGCTTCTACGCGGCGCAAATCGTGCTGGCCTTCGAGTACCTG
CACTACTTGGACCTCATCTACCGTGATCTGAAGCCGGAGAATCTGCTGATTGACTCGCAGGGCTACCTCAAGGTGACGGA
CTTCGGTTTTGCCAAGCGGGTCAAGGGACGCACCTGGACACTGTGCGGCACGCCCGAATACCTGGCCCCGGAGATCATTC
TGTCCAAGGGCTATAACAAGGCCGTGGACTGGTGGGCGTTGGGCGTACTCGTCTACGAAATGGCCGCCGGCTATCCGCCG
TTCTTTGCGGATCAGCCGATTCAGATCTACGAGAAGATCGTCTCCGGCAAGGTGCGCTTCCCATCGCACTTTGGCTCCGA
TCTGAAGGACCTACTGCGCAACCTGCTGCAGGTGGATCTGACCAAGCGCTACGGCAATCTGAAGGCGGGCGTCAATGATA
TTAAGAACCAGAAGTGGTTCGCCTCCACCGACTGGATTGCGATCTTCCAAAAGAAAATCGAGGCGCCGTTCATTCCGCGG
TGTAAGGGTCCCGGCGACACGAGCAATTTCGATGACTACGAGGAGGAGGCGCTGCGGATCTCCAGCACCGAGAAGTGTGC
CAAGGAGTTTGCTGAATTCTAG

ORF - retro_dmel_60 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 51.8 %
Parental protein coverage: 66.8 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalHDSSESIEEDDGNETDDEEDDDESEESSSVQTAKGVRKYHLDDYQIIKTVGTGTFGRVCLCRDRISEKYC
.....S....D..ET..E......EE..............LDD...IKT.GTG.FGRV..........Y.
RetrocopyNNATTSNKKVDAAETVKEFLEQAKEEFEDKWRRNPTNTAALDDFERIKTLGTGSFGRVMIVQHKPTKDYY
ParentalAMKILAMTEVIRLKQIEHVKNERNILREIRHPFVISLEWSTKDDSNLYMIFDYVCGGELFTYLRNAGKFT
AMKIL....V..LKQ.EH..NE..IL..I..PF..SL....KD.SNLYM...YV.GGE.F..LR..G.F.
RetrocopyAMKILDKQKVVKLKQVEHTLNEKRILQAIQFPFLVSLRYHFKDNSNLYMVLEYVPGGEMFSHLRKVGRFS
ParentalSQTSNFYAAEIVSALEYLHSLQIVYRDLKPENLLINRDGHLKITDFGFAKKLRDRTWTLCGTPEYIAPEI
...S.FYAA.IV.A.EYLH.L...YRDLKPENLLI...G.LK.TDFGFAK....RTWTLCGTPEY.APEI
RetrocopyEPHSRFYAAQIVLAFEYLHYLDLIYRDLKPENLLIDSQGYLKVTDFGFAKRVKGRTWTLCGTPEYLAPEI
ParentalIQSKGHNKAVDWWALGVLIYEMLVGYPPFYDEQPFGIYEKILSGKIEWERHMDPIAKDLIKKLLVNDRTK
I.SKG.NKAVDWWALGVL.YEM..GYPPF...QP..IYEKI.SGK.....H.....KDL...LL..D.TK
RetrocopyILSKGYNKAVDWWALGVLVYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFGSDLKDLLRNLLQVDLTK
ParentalRLGNMKNGADDVKRHRWFKHLNWNDVYSKKLKPPILPDVHHDGDTKNFDDYPEK
R.GN.K.G..D.K...WF....W.....KK...P..P.....GDT.NFDDY.E.
RetrocopyRYGNLKAGVNDIKNQKWFASTDWIAIFQKKIEAPFIPRCKGPGDTSNFDDYEEE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_60 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_60 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Monodelphis domestica ENSMODG000000000051 retrocopy
Nomascus leucogenys ENSNLEG000000085411 retrocopy
Drosophila melanogaster FBgn0000489 1 retrocopy
retro_dmel_60 ,



Copyright © RetrogeneDB 2014-2017