RetrogeneDB ID: retro_dmel_73

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 2L:7471545..7472205(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0031918
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG4115
• Ensembl ID: FBgn0038017
• Aliases: None
• Description: None

Sequence

>retro_dmel_73
ATGTCTGTGCTGCGTGCACTGATGTTTCTGGCCTTTGGTGCCACCGTGGCGCTGGCCCAACGTCGCCTGGCTCTGCCCGA
TCCGAGGAGTTGCGCCAACCGGGTGCGCCATGCCAGCTATCGGGATGCCAGGGGCGTGTCCCACTCGTACTTCTTCAGCT
GGGAGCATGCTCCTACCCGCAGCCTGGAGGTGGATTGGCTGGATGCGAGGAACATCTGCCGCAGGCACTGCATGGATGCC
GTTTCCCTGGAGACGCCACAGGAGAATGACTTTGTGAAGCAGAGGATTGCCAGGGGCAATGTGCGATACATTTGGACCTC
GGGCAGGAAGTGCAACTTCGCTGGCTGCGACAGGCCCGATCTGCAGCCTCCCAATGAGAACGGTTGGTTCTGGTCGGGAT
CGGGGGCAAAGATTGGACCCACTTCGCAGAGGAACACCGGCGATTGGTCTTCAACGGGCGGATACCAACAGCCGCAGCCC
GATAACCGGGAGGCCGCGCAGGGCAACGACGAGAGCTGCCTGTCCATCCTGAACAACTTCTACAACGATGGCATCAAGTG
GCACGACGTGGCCTGCCATCACATCAAGCCATTTGTGTGCGAGGACTCCGATGAGCTGTTGAACTTCGTCCGCTCCCGGA
ACCCCAATGTCCGCTTGTAA

Alignment

ORF - retro_dmel_73 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.3 %
• Parental protein coverage: 88.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RLEPPNPQLCAQRVIHEKTPDGKG----YFFSWRDPQLKGVEEDWLTARNYCRRRCMDSVSLETSLENEW
          RL..P.P..CA.RV.H....D..G....YFFSW........E.DWL.ARN.CRR.CMD.VSLET..EN..
Retrocopy RLALPDPRSCANRVRHASYRDARGVSHSYFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENDF

Parental  IKQYVVRENVKYIWTSGRLCDFKGCDRPDLQPTNINGWFWTATLQKLAPTTERNQGDWSPTGGIGLPQPD
          .KQ...R.NV.YIWTSGR.C.F.GCDRPDLQP.N.NGWFW.....K..PT..RN.GDWS.TGG...PQPD
Retrocopy VKQRIARGNVRYIWTSGRKCNFAGCDRPDLQPPNENGWFWSGSGAKIGPTSQRNTGDWSSTGGYQQPQPD

Parental  NREYKQNGAPENCLALLNQFYNDGVNWHDVACHHKKSFVCEENDALLKYVRYTNPNLRI
          NRE..Q.G..E.CL..LN.FYNDG..WHDVACHH.K.FVCE..D.LL..VR..NPN.R.
Retrocopy NREAAQ-GNDESCLSILNNFYNDGIKWHDVACHHIKPFVCEDSDELLNFVRSRNPNVRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_73 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_73 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Drosophila melanogaster	FBgn0038017	1 retrocopy	retro_dmel_73 ,