RetrogeneDB ID:

retro_dmel_77

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:X:18633310..18633757(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0030951
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:tsr
Ensembl ID:FBgn0011726
Aliases:None
Description:twinstar [Source:FlyBase gene name;Acc:FBgn0011726]


Retrocopy-Parental alignment summary:






>retro_dmel_77
ATGGCATCTGGAATTAATTTGAGCCGCGAGTGTCAGCACGTGTTCGAGCAGATCCGGAAGCTGAAGCAACATCGCTACGC
GGTCTTCGTCATCCAGGACGAGCGGGAGATTAAGGTGGAGGTGCTTGGAGTAAGGGAGGCGAACTACGACGACTTCCTGG
CGGATCTGCAACGTGCCGGATCCAATCAGTGCCGATTCGCTGTCTACGACTATGAGTATCAGCACCAGTGCCAGGGCACC
TTGTCCACCTGCCTGAAGGAGAAGCTAATCCTGATGCTCTGGTGTCCCACTCTGGCCAGGATCAAGGACAAGATGCTCTA
CTCCAGCACGTTTGCGGTGCTCAAGCGAGAGTTTCCCGGCGTCCAGAAGTGCATTCAGGCCACCGAACCGGAGGAGGCGT
GCCGCAATGCTGTCGAGGAGCAGCTGCGCTCCTTGGACAGGGAGTAG

ORF - retro_dmel_77 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.7 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFD
MASG...S..C....E.I.K.K.HRY..F.I.DE..I.VE....R.A.YD.FL.D.Q..G...CR....D
RetrocopyMASGINLSRECQHVFEQIRKLKQHRYAVFVIQDEREIKVEVLGVREANYDDFLADLQRAGSNQCRFAVYD
ParentalFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEE
.EY.HQCQGT.....K.KL.LM.WCP..A..K.KMLYSS.F..LK....GVQK.IQAT...EA.R.AVEE
RetrocopyYEYQHQCQGTLSTCLKEKLILMLWCPTLARIKDKMLYSSTFAVLKREFPGVQKCIQATEPEEACRNAVEE
ParentalKLRATDRQ
.LR..DR.
RetrocopyQLRSLDRE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_77 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_77 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Drosophila melanogaster FBgn0011726 1 retrocopy
retro_dmel_77 ,



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