RetrogeneDB ID:

retro_dnov_10

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_7509:105307..105892(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSDNOG00000016923
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSDNOG00000018185
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_dnov_10
TTTAGTTCATCCCTGGCAAAAGCAGTTATTAAAACTACTGAAGATTATATGCAGCCTCAGTTTGGCCCCGGCAGACTTTT
ACATTCAGCGGTTGTGCCAGAAGGGTCAGGACTTCAAGATTGCTCCACACATCAAACAGCATCAGATCATAGCCATGATG
AAATATCAGACCTAGACAGCTACAAATCAAACAGTAAAAACAATTCCTGTCTTATATCAGAATCCAAGAGAAACAGACCT
GTCAGTGTTCCGGTGGGTCAACTGAGAGTTGCAGAATACTCTTCTTTAAAATTTCAGTCAGCTCAGAATTGGCATAGAAT
CCCTCAAAGACTGAAACTTCAATCAAGAATGATTAGAGTAACAGCTTACAAAAATGGATCTAGAACAGTCTTTGCCAAAG
TTACTGTGCCATCCATCACCTTGTTGCTGGAGGAATGCACTGAAAAGCTGAAGCTGAACATGGCTGCGAGAAGAGTGTTC
TTGGCAGACGGCACTGAAGCCCTTGAACCTAAAGATATACCCCATGAAGCTGATGTTTATGTTTCAACTGGAGAGCCCTT
TTTAGATCCATTCAAAAAAATTAAA

ORF - retro_dnov_10 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.49 %
Parental protein coverage: 55.24 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalFSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC
FSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC
RetrocopyFSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC
ParentalLILESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT
LI.ESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT
RetrocopyLISESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT
ParentalLLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK
LLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK
RetrocopyLLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .00 RPM 0 .00 RPM
SRP012922_cerebellum 0 .14 RPM 0 .14 RPM
SRP012922_heart 0 .23 RPM 0 .00 RPM
SRP012922_kidney 0 .55 RPM 1 .10 RPM
SRP012922_liver 0 .15 RPM 0 .00 RPM
SRP012922_lung 0 .31 RPM 1 .37 RPM
SRP012922_quadricep_muscle 0 .00 RPM 0 .00 RPM
SRP012922_spleen 0 .23 RPM 0 .00 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_10 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG00000018185 1 retrocopy
retro_dnov_10 ,



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