>retro_dnov_10
TTTAGTTCATCCCTGGCAAAAGCAGTTATTAAAACTACTGAAGATTATATGCAGCCTCAGTTTGGCCCCGGCAGACTTTT
ACATTCAGCGGTTGTGCCAGAAGGGTCAGGACTTCAAGATTGCTCCACACATCAAACAGCATCAGATCATAGCCATGATG
AAATATCAGACCTAGACAGCTACAAATCAAACAGTAAAAACAATTCCTGTCTTATATCAGAATCCAAGAGAAACAGACCT
GTCAGTGTTCCGGTGGGTCAACTGAGAGTTGCAGAATACTCTTCTTTAAAATTTCAGTCAGCTCAGAATTGGCATAGAAT
CCCTCAAAGACTGAAACTTCAATCAAGAATGATTAGAGTAACAGCTTACAAAAATGGATCTAGAACAGTCTTTGCCAAAG
TTACTGTGCCATCCATCACCTTGTTGCTGGAGGAATGCACTGAAAAGCTGAAGCTGAACATGGCTGCGAGAAGAGTGTTC
TTGGCAGACGGCACTGAAGCCCTTGAACCTAAAGATATACCCCATGAAGCTGATGTTTATGTTTCAACTGGAGAGCCCTT
TTTAGATCCATTCAAAAAAATTAAA
ORF - retro_dnov_10 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
99.49 % |
Parental protein coverage: |
55.24 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC |
| FSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC |
Retrocopy | FSSSLAKAVIKTTEDYMQPQFGPGRLLHSAVVPEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSC |
|
Parental | LILESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT |
| LI.ESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT |
Retrocopy | LISESKRNRPVSVPVGQLRVAEYSSLKFQSAQNWHRIPQRLKLQSRMIRVTAYKNGSRTVFAKVTVPSIT |
|
Parental | LLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK |
| LLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK |
Retrocopy | LLLEECTEKLKLNMAARRVFLADGTEALEPKDIPHEADVYVSTGEPFLDPFKKIK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
0 .00 RPM |
SRP012922_cerebellum |
0 .14 RPM |
0 .14 RPM |
SRP012922_heart |
0 .23 RPM |
0 .00 RPM |
SRP012922_kidney |
0 .55 RPM |
1 .10 RPM |
SRP012922_liver |
0 .15 RPM |
0 .00 RPM |
SRP012922_lung |
0 .31 RPM |
1 .37 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
0 .00 RPM |
SRP012922_spleen |
0 .23 RPM |
0 .00 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_10 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.